#Size of module	#Names of TFs and functional classification
	23	MAL33, Carbohydrate metabolism	GAL4, Carbohydrate metabolism	UGA3, Nitrogen metabolism	YAP6, Stress response (salt tolerance)	PDR1, Drug response	XBP1, Carbohydrate metabolism : Cell cycle	GZF3, Nitrogen metabolism	ROX1, Electron transport	TEC1, Cell differentiation	MIG3, Reistance to hydroxyurea : Carbohydrate metabolism	ZAP1, Zinc homeostasis	MSN4, "Stress response (heat, oxidative and carbon compound deprivation)"	DAL80, Nitrogen metabolism	LEU3, Amino acid metabolism	DAT1, Binds AT rich sequence	AFT2, Iron homeostasis : Stress response (oxidative)	SMP1, Stress response (osmotic)	STP4, Uncharacterized	YAP5, Stress response	GAT3, Binds to sub-telomreic regions	HAP1, Osmoregulation	RGM1, Overexpression limits cell growth	YPR196W, Uncharacterized
	15	NRG1, Glucose metabolism : Drug response : Cell differentiation	RIM101, pH regulation : Cell differentiation	PHD1, Cell differentiation	ASH1, Homothallic switching	SOK2, Cell differentiation	CIN5, Stress response (salt tolerance) : Drug response	RLM1, Cellular integrity	GLN3, Nitrogen metabolism	SUT1, Sterol synthesis and uptake : Induction of hypoxic gene expression	SKN7, "Stress response (heat shock, oxidative), Osmoregulation"	DAL81, Nitrogen metabolism	MOT3, Regulation of hypoxic genes : Ergosterol biosynthesis	CUP9, Copper homeostasis	SWI4, Cell division	AZF1, Cell division
	11	HMS2, Cell differentiation	YRR1, Drug response	RDS1, Resistance to cycloheximide	MGA1, Cell differentiation	STB5, Drug response	CST6, Carbon catobolism (non-optimal source)	RTG3, Amino acid metabolism : Citrate metabolism	UPC2, Ergosterol biosynthesis	STP1, tRNA processing : Amino acid permease expression	RPH1, DNA damage	RTG1, Intracellular communication
	07	MET32, Amino acid metabolism	IXR1, Oxygen regulation	BAS1, Nucleotide biosynthesis	MET4, Amino acid metabolism	MET31, Amino acid metabolism	RME1, Cell division : Cell differentiation	MAC1, Copper and Iron transport
	07	MBP1, Cell cycle	YAP3, Stress response	FZF1, Sulphite metabolism	MCM1, Cell cycle	SWI6, Cell cycle	ACE2, Cytokinesis	SWI5, Cell cycle
	06	ARG80, Amino acid metabolism	SIP4, Gluconeogenesis	YAP1, "Stress response (oxidative, metal ion), Drug response"	YAP7, Stress response (salt tolerance)	HAC1, Protein folding : Fatty acid biosynthesis	STB4, Uncharacterized
	06	MIG1, Glucose metabolism	MIG2, Glucose metabolism	REB1, Cell division : rRNA biosynthesis	INO2, Phospholipid biosynthesis	INO4, Fatty acid biosynthesis	GCR1, Glycolysis
	05	HMLALPHA1, Mating type specificity	STE12, Pheromone response	HMRA1, Mating type specificity	YER108C, Cell differentiation	MSN1, Cell differentiation : Stress (osmotic)
	05	THI2, Thiamine biosynthesis	YOX1, Cell cycle	FKH2, Cell cycle : Cell differentiation	HMS1, Cell differentiation	TYE7, Glucose metabolism
	04	MET28, Amino acid metabolism	PPR1, Nucleotide biosynthesis	NDT80, Sporulation	SPT23, Fatty acid metabolism : Response to cold
	04	PDR3, Drug response	UME6, Sporulation : Amino acid biosynthesis	HSF1, Stress response (heat shock)	YML081W, Uncharacterized
	03	CAT8, Diauxic shift : Carbon compound metabolism	CYC8, Stress response: Cell division : Flocculation	TOS4, Cell cycle : Pheromone response
	03	WAR1, Stress response (weak acid)	YDR026C, Uncharacterized	CHA4, Amino acid metabolism
	03	TOS8, Cell cycle	PIP2, Fatty acid metabolism : Peroxisome biogenesis	YPL230W, Uncharacterized
	03	ADR1, Carbon compound metabolism : Peroxisome biogenesis	FKH1, Cell cycle : Cell differentiation	ABF1, Carbon compound metabolism : Cell cycle : Ribosome biogenesis : Nitrogen compound metabolism
	03	RPN4, Proteasome  : Ubiquitin signalling	HAP4, Electron transport : Ergosterol biosynthesis	YDR520C, Uncharacterized