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Present Affiliations 

* MRC-LMB
* Trinity College
* University of Cambridge

Past Affiliations 

* Molecular Biophysics Unit
* Indian Institute of Science
* Center for Biotechnology
* Anna University

M. Madan Babu, PhD 
Group Leader / Investigator 
MRC-Laboratory of Molecular Biology 
Hills Road, Cambridge CB2 2QH, United Kingdom 
University of Cambridge 
madanm@mrc-lmb.cam.ac.uk  


Edited Book

Bacterial Gene Regulation and Transcriptional Networks, Caister Academic Press, Ed: M. Madan Babu, Table of Contents, in press (2013)


Invited book chapters

  • Introduction to microarray data analysis - M. Madan Babu* in Computational Genomics (Ed: R. Grant), Horizon Press, U.K. PDF, Pre-reprint & supplementary material
  • Contextual inference of protein function - Aswin S. N. Seshasayee & M. Madan Babu* in Encyclopaedia of Genetics, Genomics, Proteomics and Bioinformatics (Ed: S. Subramanian), John Wiley and Sons PDF, PDF of Pre-print
  • Gene Expression Studies in Arabidopsis thaliana - a network perspective - Aswin S. N. Seshasayee*, L. Aravind & M. Madan Babu* in Floriculture, Ornamental and Plant Biotechnology: advances and topical issues (Ed: Jaime A. Teixeira da Silva), PDF
  • Chemical Molecules that Regulate Transcription and Facilitate Cell-to-Cell Communication - Arthur Wuster* and M. Madan Babu* Wiley Encyclopaedia of Chemical Biology, PDF, Supplementary material
  • General trends in the evolution of prokaryotic transcriptional regulatory networks - M. Madan Babu*, S. Balaji, L. Aravind in Genome Dynamics PDF Supplementary website
  • Evolutionary systems biology: methods to reconstruct and compare transcriptional regulatory networks - M. Madan Babu*, Benjamin Lang, L. Aravind in Methods in Molecular Biology PDF Supplementary website
  • Structure and Evolution of Transcriptional Regulatory Networks - Guilhem Chalancon* and M. Madan Babu* in Bacterial Stress Response (Ed: G Storz and R Henge; ASM press), PDF.

All publications (* indicates corresponding author; 1 indicates joint first authors)

2013

  • Weatheritt R* and Madan Babu M*. The hidden codes that constrain protein evolution. Science, PDF
  • Wickramasinghe VO, Savill JM, Chavali S, Jonsdottir AB, Rajendra E, Gruner T, Laskey RA, Madan Babu M and Venkitaraman AR. Human Inositol Polyphosphate Multikinase Regulates Transcript-Selective Nuclear mRNA Export to Preserve Genome Integrity. Molecular Cell, PDF.
  • Cumberworth A, Lamour G, Madan Babu M, Gsponer J. Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes. Biochemical Journal, PDF.
  • Dunker AK, Madan Babu M, ..., Uversky VN.What's in a name? Why these proteins are intrinsically disordered Intrinsically Disordered Proteins, PDF
  • Marcotte E, Boone C, Madan Babu M and Gavin AC. Network Biology editorial 2013. Molecular BioSystems, PDF.
  • Campiteli MG, Comin CH, Costa LDa F, Madan Babu M and Cesar RM. A methodology to infer gene networks from spatial patterns of expression--an application to fluorescence in situ hybridization images. Molecular BioSystems, PDF.
  • Buljan M*, Chalancon G, Dunker AK, Balaji S, Bateman A, Fuxreiter M and Madan Babu M*. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Curr Opin Str Biol, PDF
  • AJ Venkatakishnan*, Xavier Duepi, Guillaume Lebon, Christopher Tate, Gebhard Schertler and Madan Babu M*. Molecular signatures of G-protein coupled receptors. Nature, PDF.

2012

  • Kruse K*, Sewitz S and M. Madan Babu*. A complex network framework for unbiased statistical analyses of DNA-DNA contact maps. Nucleic Acids Research, in press.
  • Jorg Gsponer* and M. Madan Babu*. Cellular strategies to tune the availability of aggregation-prone proteins. Cell Reports, PDF.
  • Madan Babu M*, Richard Kriwacki* and Rohit Pappu. Versatility from Protein Disorder Science, PDF.
  • Chalancon G, Kruse K, Madan Babu M*. Reconfiguring regulation: How cells adapt to changing environments? Science, PDF
  • Buljan M*, Chalancon G, Eustermann S, Wagner G, Fuxreiter M, Bateman A, Madan Babu M*. Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks, Molecular Cell, PDF
  • Charoensawan V, Janga SC, Bulyk ML, Madan Babu M and Teichmann SA. DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes, Molecular Cell, PDF
  • Chandra T, Kirchner K, .. Madan Babu M, Bazett-Jones D, Tavare S, Edwards P, Lowe S, Kimura H, Gilbert D and Narita M. Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation, Molecular Cell, PDF
  • Flock T*, Venkatakrishnan AJ, Madan Babu M*. Co-evolution of residues in a sequence as a constraint to predict structure, Genome Biology, PDF
  • de Groot N*, Torrent M, Vilar-Pique A, Lang B, Ventura S, Gsponer J, Madan Babu M*. Evolutionary selection for protein aggregation, Biochemical Society Transactions, PDF
  • Chalancon G*, Ravarani C, Balaji S, Martinez-Arias A, Aravind L, Jothi R, Madan Babu M*. Interplay between gene expression noise and regulatory network architecture. Trends in Genetics, PDF
  • Hebenstreit D, Deonari A, Madan Babu M and Teichmann SA. Duel of the Fates: The Role of Transcriptional Circuits and Noise in CD4+ Cells, Curr Opin Cell Biol, PDF
  • Nagulapallii M, Parigi G, .., Madan Babu M, Luchinat C, Tzakos A. Recognition Pliability is coupled to Structural Heterogeneity: a Calmodulin - Intrinsically Disordered Binding Region Complex. Structure, PDF
  • Trott J, Hayashi K, Surani A, Madan Babu M* and Martinez-Arias A*. Dissecting ensemble networks in ES cell populations reveals micro-heterogeneity underlying pluripotency. Molecular BioSystems, PDF
  • Moeller A, Xie SQ, Hosp F, Lang B, Phatnani HP, James S, Ramirez F, Collin GB, Naggert JK, Madan Babu M, Greenleaf AL, Selbach M, Pombo A. Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease. Mol Cell Proteomics, PDF
  • Madan Babu M*. Intrinsically Disordered Proteins. Molecular BioSystems, PDF

2011

  • Epithelial organisation revealed by a network of cellular contacts - Luis Escudero*, Luciano Costa, Anna Kicheva, James Briscoe, Matthew Freeman and M. Madan Babu*, Nature Communications, PDF
  • Principles of Metabolic Network - Chalancon G, Kruse K and M. Madan Babu*, Wiley Encyclopedia, PDF
  • Evolution of eukaryotic genome architecture: insights from the study of a rapidly evolving metazoan, Oikopleura dioica - Sreenivas Chavali, David A. de Lima Morais, Julian Gough and Madan Babu M. Bioessays, PDF
  • Intrinsically disordered proteins: regulation and disease - M. Madan Babu*, van der Lee R, de Groot NS, Gsponer J. Curr Opin Str Biol, PDF, Extended version.
  • Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum - Sucgang R, ... Madan Babu M, ... Grigoriev IV. Genome Biology, PDF.
  • Subunit-selective N-terminal domain associations organize the formation of AMPA receptor heteromers - Rossmann M, Sukumaran M, Penn AC, Veprintsev DB, Madan Babu M, Greger IH. EMBO Journal, PDF.
  • Unanticipated inter and intra-kingdom cross-talk involving small-molecules - Aswin Seshasayee amd Madan Babu M, Environmental Microbiology Reports, PDF

2010

  • Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action - Kapitzky L, Beltrao P, Berens TJ, Gassner N, Zhou C, Wuster A, Wu J, Madan Babu M, Elledge SJ, Toczyski D, Lokey RS, Krogan NJ. Molecular Systems Biology, PDF.
  • Fc receptor I alpha chain (CD64) expression in macrophages is critical for the onset of meningitis by Escherichia coli K1 - Mittal R, Sukumaran SK, Selvaraj SK, Wooster DG, Madan Babu M, Schreiber AD, Verbeek JS, Prasadarao NV. PLoS Pathogens, PDF.
  • Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans - Weber KP, De S, Kozarewa I, Turner DJ, Madan Babu M, de Bono M. PLoS One, PDF.
  • Spial: Analysis of sub-type specific features in multiple sequence alignments of proteins - Arthur Wuster, A J Venkatakrishnan, Gebhard Schertler, M. Madan Babu*. Bioinformatics, PDF, SPIAL.
  • Time to scale up - Guilhem Chalancon* and M. Madan Babu*. Nature Nanotechnology, PDF, Original version.
  • A time-invariant principle of genome evolution - Subhajyoti De* and M. Madan Babu*. PNAS, PDF, Supplementary material.
  • Genomic neighbourhood and the regulation of gene expression - Subhajyoti De* and M. Madan Babu*. Current Opinion in Cell Biology, PDF, Extended version
  • An expanded Oct4 interaction network: implications for stem cell biology, development and disease - Pardo M*, Lang B*, Lu Y, Prosser H, Bradley A, M. Madan Babu* and Choudhary JS*. Cell Stem Cell, PDF, Cover, Preview
  • Early Career Award Lecture: Structure, Evolution and Dynamics of Gene Regulatory Networks - M. Madan Babu*. Biochemical Society Transactions, PDF.
  • Structure and Evolution of Transcriptional Regulatory Networks - Guilhem Chalancon* and M. Madan Babu* in Bacterial Stress Response (Ed: G Storz and R Henge; ASM press), PDF.
  • TAT-pathway dependent lipoproteins as a niche based adaptation in bacteria - Shruthi S, M. Madan Babu and K. Sankaran. Journal of Molecular Evolution, PDF.
  • Transcriptional control of the quorum sensing response in yeast - Arthur Wuster* and M. Madan Babu*. Molecular BioSystems, PDF.

2009

  • Dissecting the expression dynamics of RNA-binding proteins in post-transcriptional regulatory networks - Nitish Mittal, Nilanjan Roy, M. Madan Babu and Sarath Janga. PNAS, PDF.
  • The efficiency of mitochondrial electron transport chain is increased in the long-lived mrg19 Saccharomyces cerevisiae - Nitish Mittal, M. Madan Babu, Nilanjan Roy. Aging Cell, PDF.
  • Xpf and Not the Fanconi Anaemia Proteins or Rev3 Accounts for the Extreme Resistance to Cisplatin in Dictyostelium discoideum - Xiao-Yin Zhang, Judith Langenick, David Traynor, M. Madan Babu, Rob Kay, Ketan Patel. PLoS Genetics, PDF.
  • Computational and Systems Biology - M. Madan Babu* and Hirotada Mori. Molecular BioSystems, PDF.
  • Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture - Raja Jothi*,1, S. Balaji,1, Arthur Wuster, Joshua Grochow, Joerg Gsponer, Teresa Przytycka, L. Aravind and M. Madan Babu* Molecular Systems Biology, PDF.
  • Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions - R. Pache, M. Madan Babu* and P. Aloy*. BMC Systems Biology, PDF.
  • Investigating transcriptional regulation: From analysis of complex networks to discovery of cis-regulatory elements - Rekin's Janky, Jacques van Helden and M. Madan Babu. Methods, PDF
  • The rules of disorder or why disorder rules - Joerg Gsponer and M. Madan Babu. Prog Biophys Mol Biol, PDF
  • The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome - Subhajyoti De*, Sarah Teichmann and M. Madan Babu*. Genome Research, PDF, Cover image.
  • Transcript stability in the protein interaction network of Escherichia coli - Sarath Chandra Janga and M. Madan Babu. Molecular BioSystems, PDF, Cover image.

2008

  • Mechanistic Insight into Site-Restricted Monoubiquitination of FANCD2 by Ube2t, FANCL, and FANCI - Arno Alpi, Paul Pace, M. Madan Babu and Ketan Patel. Molecular Cell, pDF
  • Tight regulation of intrinsically unstructured proteins: from transcript synthesis to protein degradation - Joerg Gsponer*, Matthias Futschik, Sarah Teichmann and M. Madan Babu*. Science, PDF, Supplementary material, IUP values, Perspective
  • Gene regulation in three dimensions: Implications for genome evolution and disease - M. Madan Babu*, Sarath Chandra Janga, Ines de Santiago and Ana Pombo. Current Opinion in Genetics and Development, PDF, Cover image
  • Evidence for chromosomal preference, regional bias and positional clustering of binding in transcription factors - Sarath Chandra Janga*, Julio Collado-Vides and M. Madan Babu*. PNAS, PDF, Supplementary material
  • Principles of regulation of small molecule metabolism - Aswin SN Seshasayee, Gillian Fraser, M. Madan Babu and Nicholas Luscombe. Genome Research, PDF
  • Network based approaches for linking metabolism with environment: From organismal niches to ecological communities - Sarath Chandra Janga and M. Madan Babu. Genome Biology, PDF
  • Transcriptional Regulatory Networks - Sarath Chandra Janga* and M. Madan Babu*. Networks in Biology, Cambridge University Press, in press
  • Evolutionary and temporal dynamics of transcriptional networks - M. Madan Babu. Lecture Notes in Computer Science, PDF
  • Computational approaches to study transcriptional regulation - M. Madan Babu*. Biochemical Society Transactions, PDF
  • Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal - S. Balaji*, L. Iyer, M. Madan Babu* and L. Aravind. Trends in Genetics, PDF
  • Chemogenomics and Biotechnology - Arthur Wuster* and M. Madan Babu*. Trends in Biotechnology, PDF
  • Solitary and repetitive binding motifs for the AP2 complex alpha-appendage in amphiphysin and other accessory proteins - L. Olesen, M. Ford, E. Schmid, Y. Vallis, M. Madan Babu, P. Li, I. Mills, H. McMahon, and G. Praefcke. Journal of Biological Chemistry, PDF
  • Conservation and evolutionary dynamics of the agr cell-to-cell communication system across firmicutes - Arthur Wuster* and M. Madan Babu*. Journal of Bacteriology, PDF, Supplementary material

2007

  • High affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes - Benjamin Lang, N. Blot, E. Bouffartigues, M. Buckle, M. Geertz, C. Gualerzi, R. Mavathur, G. Muskhelishvili, C. Pon, S. Rimsky, S. Stella, M. Madan Babu* and Andrew Travers*. Nucleic Acids Research, PDF Supplementary material.
  • Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network - M.E. Futschik, G. Chaurasia, A. Tschaut, J. Russ, M. Madan Babu and H. Herzel. Journal of Integrative Bioinformatics, in press
  • Interplay Between Network Structures, Regulatory Modes and Sensing Mechanisms of Transcription Factors in the Transcriptional Regulatory Network of E. coli - S. Balaji1*, M. Madan Babu1* and L. Aravind, Journal of Molecular Biology, PDF Supplementary material
  • Chemical Molecules that Regulate Transcription and Facilitate Cell-to-Cell Communication - Arthur Wuster* and M. Madan Babu* Wiley Encyclopaedia of Chemical Biology, PDF, Supplementary material
  • General trends in the evolution of prokaryotic transcriptional regulatory networks - M. Madan Babu*, S. Balaji and L. Aravind, Genome Dynamics PDF Supplementary website
  • Evolutionary systems biology: methods to reconstruct and compare transcriptional regulatory networks - M. Madan Babu*, Benjamin Lang and L. Aravind, Methods in Molecular Biology PDF Supplementary website
  • Investigations on CH-Pi interactions in RNA binding proteins - A. Anbarasu, S. Anand, M. Madan Babu and R. Sethumadhavan International Journal of Biological Macromolecules PDF

2006

  • Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation - Madan Babu, M.*, Balaji, S, Iyer, L.M., Aravind, L* Cell Cycle, PDF Supplementary material.
  • The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons - Madan Babu, M.1,*, Iyer, L.M.1,* Balaji, S, Aravind, L* Nucleic Acids Research, PDF Supplementary material.
  • Uncovering distributed robustness in protein regulatory networks - Balaji, S, Iyer, L.M., Aravind, L* and Madan Babu, M.*, Journal of Molecular Biology, PDF, Supplementary material
  • Principles of combinatorial regulation in the transcriptional regulatory network of yeast - Balaji, S.1*, Madan Babu, M.1*, Iyer, L.M., Luscombe, N.M., Aravind, L., Journal of Molecular Biology, PDF
  • Gene Expression Studies in Arabidopsis thaliana - a network perspective - Aswin S. N. Seshasayee*, L. Aravind & M. Madan Babu* in Floriculture, Ornamental and Plant Biotechnology: advances and topical issues (Ed: Jaime A. Teixeira da Silva), PDF
  • Exploring the environmental preference of non-canonical interactions in (a/b)8 barrel proteins - Chakkaravarthi, S., Madan Babu, M., Gromiha, M., Jayaraman, G. and Sethumadhavan, R., Proteins Structure Function Genetics, PDF
  • Predicting the strongest domain-domain contact in interacting protein pairs - Nye, T., Berzuini, C., Gilks, W., Madan Babu, M., and Teichmann, S.A. Statistical Applications in Genetics and Molecular Biology, PDF.
  • The HIRAN Domain and Recruitment of Chromatin Remodeling and Repair Activities to Damaged DNA - Lakshminarayan M. Iyer, M. Madan Babu, L. Aravind, Cell Cycle, PDF.
  • Evolutionary dynamics of prokaryotic transcriptional regulatory networks - M. Madan Babu*, Sarah Teichmann, and Aravind, L.,*Journal of Molecular Biology, PDF, Supplementary material, Cover image.
  • A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins - M. Madan Babu*,1, Leena Priya, M.1, Tamil Selvan, A., Madera, M., Gough, J., and Sankaran, K.*, Journal of Bacteriology, PDF.
  • Adaptive evolution by optimizing expression levels in different environments - M. Madan Babu*, and Aravind, L., Trends in Microbiology, PDF.

2005

  • The Transcriptional Landscape of the Mammalian Genome - Carninci, P et. al., Science, PDF.
  • Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains - Balaji, S., M. Madan Babu,, Iyer, L.M., Aravind, L. Nucleic Acids Research, PDF
  • Contextual inference of protein function - Aswin S. N. Seshasayee & M. Madan Babu* in Wiley Encyclopaedia of Genetics, Genomics, Proteomics and Bioinformatics (Ed: S. Subramanian), John Wiley and Sons PDF, PDF of Pre-print
  • The genome of the social amoeba Dictyostelium discoideum - Eichinger, L. et. al., Nature, PDF
  • The many faces of Helix-Turn-Helix domain: transcription regulation and beyond - Aravind, L., Anantharaman, V., Balaji, S., M. Madan Babu, Iyer, L.M. FEMS Microbiology Reviews, PDF
  • Statistical analysis of domains in interacting protein pairs - Nye, T., Berzuini, C., Gilks, W., M. Madan Babu, and Teichmann, S.A. Bioinformatics, PDF


2004

  • Clathrin-coated pit assembly: The AP2 complex serves as an integration hub to order the dynamic network of accessory proteins - Praefcke, GJK., Ford, MGJ., Schmid, EM., Olesen, LE., Gallop, JL., Peak-Chew, S., Vallis, Y., M. Madan Babu, Mills, IG., and Harvey T. McMahon, EMBO Journal, PDF.
  • GenCompass: a universal system to analyse gene expression for any genome - N. Luscombe* and M. Madan Babu*, Trends in Biotechnology, PDF
  • Evolution of transcriptipnal regulatory networks - M. Madan Babu, PhD thesis submitted to the University of Cambridge. Thesis adviser: Sarah Teichmann.
  • Genome analysis of regulatory network dynamics - N. Luscombe*1, M. Madan Babu*1, H. Yu, M. Snyder, S. Teichmann* and M. Gerstein*, Nature, PDF.
  • Structure and evolution of gene regulatory networks - M. Madan Babu*1, N. Lucsombe1, M. Gerstein, S. Teichmann*, Curr. Opin. Struc. Biol, PDF PDF of the cover image.
  • Gene regulatory network growth by duplication - Sarah Teichmann* and M. Madan Babu*. Nature Genetics, PDF, Supplementary material
  • Introduction to microarray data analysis - M. Madan Babu* in Computational Genomics (Ed: R. Grant), Horizon Press, U.K. PDF, Pre-reprint & supplementary material

2003

  • NCI: a server to identify non canonical interactions in protein structures - M. Madan Babu*. Nucleic Acids Research, PDF
  • Loss of sigma factors could have initiated pseudogene accumulation in the Mycobacterium leprae genome - M. Madan Babu*. Trends in Microbiology, PDF, Supplementary material.
  • Evolution of Transcription Factors and the Gene Regulatory Network in E. coli - M. Madan Babu* and Sarah A. Teichmann. Nucleic Acids Research, PDF, Supplementary material
  • Functional Determinants of Transcription Factors: Protein Families and Binding Sites - M. Madan Babu* and Sarah. A. Teichmann. Trends in Genetics PDF, Supplementary material.

2002

  • Conservation of coregulation in prokaryotes and eukaryotes - Sarah Teichmann and M. Madan Babu Trends in Biotechnonology PDF
  • DOLOP - Database of Bacterial Lipoproteins - M. Madan Babu and Krishnan Sankaran. Bioinformatics PDF
  • Shigella apyrase - a novel variant of bacterial acid phosphatases? - M. Madan Babu, S. Kamalakkannan, Y.V.B.K. Subrahmanyam and Krishnan Sankaran. FEBS Letters PDF
  • A C-H..O hydrogen bond stabilized polypeptide chain reversal motif at the C-terminus of helices in proteins - M. Madan Babu, S. Kumar Singh and P. Balaram. Journal of Molecular Biology PDF
  • Inventing polypeptide folds. Registering a helices and b strands using backbone C-H..O interactions - S. Kumar Singh, M. Madan Babu and P. Balaram. Proteins: Structure Function and Genetics, PDF.
  • Virulence factors of Bordetella pertussis - M. Madan Babu*, J. Bhargavi, S. Ranajeet Singh and S. Kumar Singh. Current Science, PDF


General Articles
  • New Strains of V. cholerae - M. Madan Babu and K. Sankaran -7th Sep 2000, The Hindu, Science and Technology Section of the Indian National Newspaper. HTML    At the site
  • Bioinformatics - Aid for Genetic Data Management and Drug Discovery - M. Madan Babu - Nov 2000, CSI Communications of Computer Society of India. HTML
  • Computer applications in new drug discovery - M. Madan Babu and J. Bhargavi - manuscript in preparation.
  • Errors in Genome Annotation - M. Madan Babu Verve 2002 (Proceedings of Biotechcellence 2002, National Level Students Symposium in Biotechnology) HTML
  • Proteomics - M. Madan Babu. Verve 2001 (Proceedings of Biotechcellence 2001, National Level Students Symposium in Biotechnology)
  • Antifreeze Proteins - M. Madan Babu. Verve 2001 (Proceedings of Biotechcellence 2001, National Level Students Symposium in Biotechnology)
  • Bioinformatics - M. Madan Babu. Verve 2000 (Proceedings of Biotechcellence 2000, National Level Students Symposium in Biotechnology) HTML

Posters Presented
  • Gene regulatory network growth by duplication - 25th - 30th Oct, San Felix, Spain
  • Evolution of the gene regulatory network in E. coli by duplication - 11th - 14th June, Stockholm, Sweden - PDF
  • Protein Families and Regulatory Patterns in the Transcription Factors of E. coli at RECOMB 2002 - 18th - 21st April 2002, Washington DC, USA PDFs
  • Protein Families and Regulatory Patterns in the Transcription Factors of E. coli at DIMACs - Complexity in Biosystems conference - 8th - 10th April 2002, Rutgers University, USA PDFs
  • A Novel C-H..O hydrogen bond stabilized polypeptide chain reversal motif at the C-terminus of helices in proteins - 19th October 2001, MRC-LMB PDF

Publications in Conference Proceedings
  • Protein Families and Regulatory Patterns in the Transcription Factors of E. coli at RECOMB 2002 - 18th - 21st April 2002, Washington DC, USA PDFs - Poster Abstract
  • Integrating Bioinformatics, Medical Sciences and Drug Discovery - M. Madan Babu - accepted for presentation at the National Conference on Medical Informatics at Vijayawada, held during 24-25 Nov 2000. PDF

Undergraduate (B. Tech) Thesis
  • Analysis of C-H...O hydrogen bonding in helix terminus - Chapter I PDF
  • DATE - Database of TIM barrel enzymes - Chapter II PDF
  • Target selection for structural genomics and the structural status for the completed microbial genomes - Chapter III PDF
  • Computational identification of Chorismate mutase in the M. leprae genome - Chapter IV PDF

Summer Project Reports and Other Projects