You can download the tab delimited text file here

Key:

tf = Transcription factor
pr = Promoter
rg = Regulated gene
rf = Regulatory function
cpos = Center position
bp = Binding pattern
fn = function (activator/repressor for that promoter - no dual regulator)
class = Binding pattern class (only U/ UD / only D)

tf	pr	rg	rf	cpos	bp	ud	fn	class
RhaR	rhaS	rhaR,rhaS,	activator-only	-76.5,-57,-38.5	UUU	0	activator	U
CspA	gyrA	gyrA,	activator-only	-112,-92,-63	UUU	0	activator	U
FhlA	hypA	hypE,hypD,hypC,hypB,hypA,	activator-only	-730	U	0	activator	U
FhlA	hycA	hycH,hycG,hycF,hycE,hycD,hycC,hycB,hycA,	activator-only	-98.5	U	0	activator	U
MalT	malK	malM,lamB,malK,	activator-only	-228,-68,-37.5	UUU	0	activator	U
MalT	malS	malS,	activator-only	-37.5	U	0	activator	U
MalT	malE	malG,malF,malE,	activator-only	-233,-204,-44	UUU	0	activator	U
CaiF	fixA	fixX,fixC,fixB,fixA,	activator-only	-120.5,-67.5	UU	0	activator	U
TdcR	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	activator-only	-195	U	0	activator	U
RhaS	rhaT	rhaT,	activator-only	-58.5	U	0	activator	U
MarA	zwf	zwf,	activator-only	-54	U	0	activator	U
NarP	napFp1	napH,napG,napF,napC,napB,napA,dsbE,ccmH,ccmF,ccmE,ccmD,ccmC,ccmB,ccmA,napD,	activator-only	-44.5	U	0	activator	U
IciA	dnaAp1	recF,dnaN,dnaA,	activator-only	-56.5	U	0	activator	U
FhlA	fdhF	fdhF,	activator-only	-107.5	U	0	activator	U
XylR	xylA	xylB,xylA,	activator-only	-63.5,-43.5	UU	0	activator	U
UhpA	uhpT	uhpT,	activator-only	-64	U	0	activator	U
Cbl	tauA	tauD,tauC,tauB,tauA,	activator-only	-91	U	0	activator	U
CaiF	caiT	caiT,caiE,caiD,caiC,caiB,caiA,	activator-only	-221.5,-168.5	UU	0	activator	U
RcsB	rcsA	rcsA,	activator-only	-167	U	0	activator	U
XylR	xylF	xylR,xylH,xylG,xylF,	activator-only	-68.5,-48.5	UU	0	activator	U
TdcA	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	activator-only	-177	U	0	activator	U
KdpE	kdpABC	kdpC,kdpB,kdpA,	activator-only	-61	U	0	activator	U
FecI	fecA	fecE,fecD,fecC,fecB,fecA,	activator-only	13	D	0	activator	D
MarA	marR	marB,marA,marR,	activator-only	-61.5	U	0	activator	U
XapR	xapA	xapB,xapA,	activator-only	-119,-39	UU	0	activator	U
MalT	malPQ	malQ,malP,	activator-only	-66,-36.5	UU	0	activator	U
RcsB	wza	wcaB,wcaA,b2060,wzb,wza,	activator-only	-78.5	U	0	activator	U
RhaS	rhaB	rhaB,rhaA,rhaD,	activator-only	-72.5,-57	UU	0	activator	U
CRP	caiT	caiT,caiE,caiD,caiC,caiB,caiA,	dual-activator	-41.5	U	0	activator	U
CRP	tnaA	tnaL,tnaB,tnaA,	dual-activator	-61.5	U	0	activator	U
CRP	ivbL	ivbL,ilvN,ilvB,	dual-activator	-64	U	0	activator	U
CRP	dsdXA	dsdX,dsdA,	dual-activator	-117.5,-87.5	UU	0	activator	U
CRP	malE	malG,malF,malE,	dual-activator	-139,-105,-76	UUU	0	activator	U
FIS	hupAp	hupA,	dual-activator	-255,-219.5,-167.5,-93.5	UUUU	0	activator	U
FruR	icdAp2	icdA,	dual-activator	-77.5	U	0	activator	U
NarL	narG	narJ,narI,narH,narG,	dual-activator	-208,-190,-185,-101,-89,-79,-71,-57	UUUUUUUU	0	activator	U
FIS	argX	proM,leuT,hisR,argX,	dual-activator	-75	U	0	activator	U
CRP	gntTp	gntT,	dual-activator	-71	U	0	activator	U
CRP	ugpp2	dual-activator	-26.5	D	0	activator	D
PhoB	phoHp1	phoH,	dual-activator	-31.5	D	0	activator	D
CRP	glnAp1	glnG,glnL,glnA,	dual-activator	-71.5	U	0	activator	U
ModE	hycA	hycH,hycG,hycF,hycE,hycD,hycC,hycB,hycA,	dual-activator	-192	U	0	activator	U
FNR	nrf	nrfG,nrfE,nrfD,nrfC,nrfB,nrfA,nrfF,	dual-activator	-42.5	U	0	activator	U
CRP	aldA	aldA,	dual-activator	-60.5	U	0	activator	U
CpxR	htrA	xxxxxxxx	dual-activator	-227	U	0	activator	U
IHF	focAp1	pflB,focA,	dual-activator	-112.5	U	0	activator	U
Ada	alkA	alkA,	dual-activator	-36	U	0	activator	U
CRP	nmpC	nmpC,	dual-activator	-73.5,-31	UD	42.5	activator	UD
Lrp	yeiLp	yeiL,	dual-activator	-120	U	0	activator	U
CRP	glpACB	glpB,glpC,glpA,	dual-activator	-40.5	U	0	activator	U
FNR	cydDp	cydD,cydC,	dual-activator	-161	U	0	activator	U
ArcA	lctPp2	lctD,lctR,lctP,	dual-activator	-9.5	D	0	activator	D
IlvY	ilvC	ilvC,	dual-activator	-64,-31	UD	33	activator	UD
FNR	fumB	fumB,	dual-activator	-104.5,-61.5,-57.5	UUU	0	activator	U
NarL	nuoAp1	nuoN,nuoM,nuoL,nuoK,nuoJ,nuoI,nuoH,nuoG,nuoF,nuoE,nuoC,nuoB,nuoA,	dual-activator	-120	U	0	activator	U
TorR	torC	torD,torA,torC,	dual-activator	-79.5,-69.5,-49.5,-25.5	UUUD	24	activator	UD
IHF	glnHp2	glnQ,glnP,glnH,	dual-activator	-152,-47	UU	0	activator	U
TyrR	mtr	mtr,	dual-activator	-77	U	0	activator	U
CRP	malK	malM,lamB,malK,	dual-activator	-196,-167,-133	UUU	0	activator	U
Lrp	fimA	fimH,fimG,fimF,fimD,fimC,fimI,fimA,fimH,fimG,fimF,fimD,fimC,fimI,fimA,	dual-activator	-234,-203,-174	UUU	0	activator	U
CRP	dadAp3	dadX,dadA,	dual-activator	-73,-7	UD	66	activator	UD
FIS	pheV	pheV,	dual-activator	-75	U	0	activator	U
CRP	glpTQ	glpQ,glpT,	dual-activator	-93.5,-42	UU	0	activator	U
SoxS	pqiAp1	dual-activator	-40	U	0	activator	U
SoxS	nfo	nfo,	dual-activator	-37	U	0	activator	U
OxyR	grxAp	dual-activator	-57.5	U	0	activator	U
FNR	aspAp	aspA,dcuA,aspA,	dual-activator	-40.5	U	0	activator	U
Lrp	serCp	serC,	dual-activator	-34	D	0	activator	D
CRP	sdhp2	dual-activator	-13	D	0	activator	D
ArcA	focAp1	pflB,focA,	dual-activator	-238,-6	UD	232	activator	UD
CRP	rpoHp5	rpoH,	dual-activator	-48	U	0	activator	U
FIS	tyrT	tyrV,tyrT,	dual-activator	-75	U	0	activator	U
FIS	argU	argU,	dual-activator	-65	U	0	activator	U
CRP	acnB	acnB,	dual-activator	-37.5	U	0	activator	U
Lrp	gltB	gltF,gltB,gltD,	dual-activator	-246,-215,-152	UUU	0	activator	U
CRP	rbs	rbsK,rbsB,rbsC,rbsA,rbsD,	dual-activator	-61.5	U	0	activator	U
PdhR	lctPp1	dual-activator	-28	D	0	activator	D
NR(I)	glnAp2	glnG,glnL,glnA,	dual-activator	-139.5,-108,-89	UUU	0	activator	U
NarL	cydDp	cydD,cydC,	dual-activator	-195,-148	UU	0	activator	U
CRP	guaBA	guaA,guaB,	dual-activator	-117.5	U	0	activator	U
CRP	ptsp0	crr,ptsI,ptsH,	dual-activator	-62.5	U	0	activator	U
CRP	fixA	fixX,fixC,fixB,fixA,	dual-activator	-126.5,-69.5	UU	0	activator	U
FIS	guaBA	guaA,guaB,	dual-activator	-126,-109	UU	0	activator	U
FNR	hlyEp	hlyE,	dual-activator	-61.5	U	0	activator	U
CRP	epd	epd,pgk,	dual-activator	-70.5	U	0	activator	U
FIS	metT	leuW,metT,glnW,glnX,glnV,metU,glnU,	dual-activator	-68	U	0	activator	U
CRP	aspAp	aspA,dcuA,aspA,	dual-activator	-89.5	U	0	activator	U
FNR	arcAp1	arcA,	dual-activator	-82.5	U	0	activator	U
CRP	malS	malS,	dual-activator	-231	U	0	activator	U
FNR	adhEp2	adhE,	dual-activator	-42.5	U	0	activator	U
Lrp	tdh	kbl,tdh,	dual-activator	-66.5	U	0	activator	U
NR(I)	glnKp	amtB,glnK,	dual-activator	-82	U	0	activator	U
AraC	araJ	araJ,	dual-activator	-55	U	0	activator	U
CRP	udpP	udp,	dual-activator	-93.5,-41.5	UU	0	activator	U
CRP	nupC	nupC,	dual-activator	-89.5,-40.5	UU	0	activator	U
NarL	fdnG	fdnI,fdnH,fdnG,	dual-activator	-124,-110,-105,-77	UUUU	0	activator	U
CRP	furpa	fur,	dual-activator	-78	U	0	activator	U
CRP	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	dual-activator	-40.5	U	0	activator	U
FIS	lpdA	lpdA,	dual-activator	-29	D	0	activator	D
FIS	serT	serT,	dual-activator	-66	U	0	activator	U
CRP	ansBp2	ansB,	dual-activator	-91.5	U	0	activator	U
OxyR	dps	dps,	dual-activator	-51	U	0	activator	U
FIS	glyU	dual-activator	-67	U	0	activator	U
AraC	araE	araE,	dual-activator	-64,-43	UU	0	activator	U
Lrp	stpAp1	stpA,	dual-activator	-539,-490,-107	UUU	0	activator	U
AraC	araBAD	araD,araA,araB,	dual-activator	-64,-43	UU	0	activator	U
CpxR	htrA	xxxxxxxxx	dual-activator	-67	U	0	activator	U
FNR	nikAp	nikR,nikD,nikC,nikB,nikA,nikE,	dual-activator	-41	U	0	activator	U
FIS	proL	proL,	dual-activator	-66	U	0	activator	U
IHF	ilvGp2	ilvA,ilvD,ilvE,ilvM,ilvG_2,ilvG_1,ilvL,	dual-activator	-139,-92	UU	0	activator	U
CRP	yiaKp	dual-activator	-106	U	0	activator	U
OxyR	katG	katG,	dual-activator	-52	U	0	activator	U
CRP	manX	manZ,manY,manX,	dual-activator	-90,-40.5	UU	0	activator	U
FNR	nirB	cysG,nirC,nirD,nirB,	dual-activator	-89.5,-42	UU	0	activator	U
FIS	metYp1	metY,pnp,rpsO,truB,rbfA,infB,nusA,yhbC,metY,infB,nusA,yhbC,metY,	dual-activator	-68	U	0	activator	U
CRP	glgSp1	glgS,	dual-activator	-41	U	0	activator	U
CRP	ptsp0b	crr,ptsI,ptsH,	dual-activator	-59.5	U	0	activator	U
IHF	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	dual-activator	-103	U	0	activator	U
PhoB	phoB	phoR,phoB,	dual-activator	-31.5	D	0	activator	D
DnaA	polAp	dual-activator	-101	U	0	activator	U
PhoB	pstS	pstB,pstA,pstC,pstS,phoU,	dual-activator	-54.5,-32.5	UD	22	activator	UD
CRP	ompBp2	ompR,envZ,	dual-activator	-75	U	0	activator	U
Lrp	gcvT	gcvP,gcvH,gcvT,	dual-activator	-161	U	0	activator	U
PhoB	phoE	phoE,	dual-activator	-113.5,-88.5,-31.5	UUD	57	activator	UD
CRP	nagE	nagE,	dual-activator	-70,-61.5,-27.5	UUD	34	activator	UD
CysB	cysD	cysD,cysC,cysN,	dual-activator	-85	U	0	activator	U
CRP	araFGH	araH_2,araH_1,araG,araF,	dual-activator	-41.5	U	0	activator	U
CRP	sdhC	sucD,sucC,sucB,sucA,b0725,sdhB,sdhA,sdhD,sdhC,	dual-activator	-80	U	0	activator	U
FNR	caiF	caiF,	dual-activator	-57	U	0	activator	U
FIS	nrd	nrdB,nrdA,	dual-activator	-156	U	0	activator	U
CRP	galS	galS,	dual-activator	-42	U	0	activator	U
CRP	uxuA	uxuB,uxuA,	dual-activator	-58	U	0	activator	U
CRP	aldB	aldB,	dual-activator	-59.5	U	0	activator	U
CRP	melR	melR,	dual-activator	-40.5	U	0	activator	U
IHF	yeiLp	yeiL,	dual-activator	-227,-193	UU	0	activator	U
FIS	thrU	thrT,glyT,tyrU,thrU,	dual-activator	-75	U	0	activator	U
CRP	mtl	mtlR,mtlD,mtlA,	dual-activator	-261.5,-219.5,-175.5,-102.5,-58.5	UUUUU	0	activator	U
FIS	leuX	leuX,	dual-activator	-75	U	0	activator	U
CRP	focAp1	pflB,focA,	dual-activator	-41.5	U	0	activator	U
FIS	proPp2	dual-activator	-81,-41	UU	0	activator	U
ArcA	focAp3	pflB,focA,	dual-activator	-15.5	D	0	activator	D
Lrp	osmCp2	dual-activator	-62	U	0	activator	U
FNR	focAp2	focA,pflB,	dual-activator	-58	U	0	activator	U
FIS	lysT	lysW,valT,lysT,	dual-activator	-75	U	0	activator	U
AraC	araFGH	araH_2,araH_1,araG,araF,	dual-activator	-154,-80	UU	0	activator	U
CRP	nagB	nagD,nagC,nagA,nagB,	dual-activator	-95.5,-70	UU	0	activator	U
IHF	ompF	ompF,	dual-activator	-108	U	0	activator	U
CRP	hlyEp	hlyE,	dual-activator	-61.5	U	0	activator	U
PhoB	ugpp1	dual-activator	-54.5,-30.5	UD	24	activator	UD
CRP	mglB	mglC,mglA,mglB,	dual-activator	-41.5	U	0	activator	U
CRP	cddp	dual-activator	-91	U	0	activator	U
CRP	glpD	glpD,	dual-activator	-63	U	0	activator	U
NR(I)	glnHp2	glnQ,glnP,glnH,	dual-activator	-122,-109	UU	0	activator	U
NagC	glmUp1	glmU,glmS,	dual-activator	-200,-47	UU	0	activator	U
CRP	crp	crp,	dual-activator	-60.5	U	0	activator	U
CRP	acnAp2	acnA,	dual-activator	-40.5	U	0	activator	U
FNR	glpACB	glpB,glpC,glpA,	dual-activator	-41	U	0	activator	U
Ada	ada	ada,alkB,	dual-activator	-42	U	0	activator	U
CRP	yhfA	yhfA,	dual-activator	-44.5	U	0	activator	U
SoxS	marR	marB,marA,marR,	dual-activator	-61.5	U	0	activator	U
CRP	caiF	caiF,	dual-activator	-41.5	U	0	activator	U
IHF	hycA	hycH,hycG,hycF,hycE,hycD,hycC,hycB,hycA,	dual-activator	-38.5	U	0	activator	U
Lrp	ilvIHp1	ilvH,ilvI,	dual-activator	-245,-219.5,-133,-104.5,-74,-52	UUUUUU	0	activator	U
FIS	ndh	ndh,	dual-activator	-123	U	0	activator	U
FIS	valU	lysV,valY,valX,valU,	dual-activator	-74	U	0	activator	U
PhoB	phoA	psiF,phoA,	dual-activator	-31.5	D	0	activator	D
CRP	araJ	araJ,	dual-activator	-85.5,40	UD	125.5	activator	UD
FNR	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	dual-activator	-140	U	0	activator	U
SoxS	zwf	zwf,	dual-activator	-53	U	0	activator	U
CpxR	ppiAp1	xxxxxx	dual-activator	-47	U	0	activator	U
CRP	malT	malT,	dual-activator	-70.5	U	0	activator	U
CRP	mlcp2	dual-activator	-71.5	U	0	activator	U
IHF	fimA	fimH,fimG,fimF,fimD,fimC,fimI,fimA,fimH,fimG,fimF,fimD,fimC,fimI,fimA,	dual-activator	-341,-76	UU	0	activator	U
CRP	furpb	dual-activator	-71	U	0	activator	U
FNR	narG	narJ,narI,narH,narG,	dual-activator	-41	U	0	activator	U
CRP	mdh	mdh,	dual-activator	-60.5	U	0	activator	U
CRP	deop2	deoD,deoB,deoA,deoC,	dual-activator	-41.5	U	0	activator	U
CRP	araE	araE,	dual-activator	-99	U	0	activator	U
CynR	cynT	cynX,cynS,cynT,	dual-activator	-48	U	0	activator	U
SoxS	sodA	sodA,	dual-activator	-42	U	0	activator	U
FNR	dmsA	dmsC,dmsB,dmsA,	dual-activator	-47	U	0	activator	U
CRP	gltAp1	gltA,	dual-activator	-107.5	U	0	activator	U
CRP	cytR	dual-activator	-64.5	U	0	activator	U
SoxS	micFp1	dual-activator	-119.5,-38.5	UU	0	activator	U
FadR	fabA	fabA,	dual-activator	-40	U	0	activator	U
IHF	dps	dps,	dual-activator	-98.5	U	0	activator	U
CysB	tauA	tauD,tauC,tauB,tauA,	dual-activator	-202,-93,-38	UUU	0	activator	U
IHF	aceBAK	aceB,aceK,aceA,	dual-activator	-161,-78	UU	0	activator	U
Lrp	ompF	ompF,	dual-activator	-77	U	0	activator	U
FNR	hypA	hypE,hypD,hypC,hypB,hypA,	dual-activator	-48.5	U	0	activator	U
NarL	nirB	cysG,nirC,nirD,nirB,	dual-activator	-69.5	U	0	activator	U
FIS	alaW	alaW,alaX,	dual-activator	-76	U	0	activator	U
CRP	araBAD	araD,araA,araB,	dual-activator	-93	U	0	activator	U
ArcA	cydAp1	cydB,cydA,	dual-activator	-307.5,-92.5,-86.5	UUU	0	activator	U
CysB	cysKp1	cysK,	dual-activator	-79	U	0	activator	U
FNR	dcuBp	dcuB,fumB,dcuB,	dual-activator	-45.5	U	0	activator	U
FIS	adhE	adhE,	dual-activator	-148,-68,-42	UUU	0	activator	U
FNR	focAp1	pflB,focA,	dual-activator	-41	U	0	activator	U
FIS	pheU	pheU,	dual-activator	-75	U	0	activator	U
SoxR	soxS	soxS,	dual-activator	-25	D	0	activator	D
CRP	uhpT	uhpT,	dual-activator	-103.5	U	0	activator	U
FruR	pckA	pckA,	dual-activator	-139.5	U	0	activator	U
MetR	glyA	glyA,	dual-activator	-143,-121	UU	0	activator	U
IHF	gltAp1	gltA,	dual-activator	-70	U	0	activator	U
NarL	narKp1	narK,	dual-activator	-194,-97	UU	0	activator	U
OmpR	ompF	ompF,	dual-activator	-96,-86,-76	UUU	0	activator	U
FruR	ptsI	crr,ptsI,ptsH,	dual-activator	-48.5	U	0	activator	U
CRP	dcuBp	dcuB,fumB,dcuB,	dual-activator	-106.5	U	0	activator	U
FIS	leuQ	leuV,leuP,leuQ,	dual-activator	-74	U	0	activator	U
NarL	nrf	nrfG,nrfE,nrfD,nrfC,nrfB,nrfA,nrfF,	dual-activator	-74.5	U	0	activator	U
CRP	galp1	galM,galK,galT,galE,	dual-activator	-41	U	0	activator	U
CRP	lac	lacA,lacY,lacZ,	dual-activator	-60	U	0	activator	U
CRP	dadAp1	dadX,dadA,	dual-activator	-44	U	0	activator	U
FNR	narKp1	narK,	dual-activator	-79.5,-41.5	UU	0	activator	U
CRP	nupG	nupG,	dual-activator	-42.5,56.5	UD	99	activator	UD
FIS	aspV	aspV,	dual-activator	-76	U	0	activator	U
DnaA	nrd	nrdB,nrdA,	dual-activator	-48,-36.5	UU	0	activator	U
FIS	serX	serX,	dual-activator	-75	U	0	activator	U
LysR	tdcA	tdcE,tdcD,tdcF,tdcG,tdcC,tdcB,tdcA,	dual-activator	-175	U	0	activator	U
OxyR	ahpC	ahpF,ahpC,	dual-activator	-56.5	U	0	activator	U
FNR	frd	frdD,frdC,frdB,frdA,	dual-activator	-47	U	0	activator	U
CRP	araC	araC,	dual-activator	-70	U	0	activator	U
FIS	thrW	thrW,	dual-activator	-66	U	0	activator	U
ArcA	cydAp2	cydB,cydA,	dual-activator	-77.5	U	0	activator	U
FNR	hypB	hypE,hypD,hypC,hypB,	dual-activator	-42.5	U	0	activator	U
FIS	queA	dual-activator	-58	U	0	activator	U
CysB	cysJIH	cysI,cysH,cysJ,	dual-activator	-55	U	0	activator	U
CRP	ptsp1b	crr,ptsI,ptsH,	dual-activator	-42.5	U	0	activator	U
CytR	tsxp2	tsx,	dual-activator	-52.5	U	0	activator	U
FNR	napFp1	napH,napG,napF,napC,napB,napA,dsbE,ccmH,ccmF,ccmE,ccmD,ccmC,ccmB,ccmA,napD,	dual-activator	-64.5	U	0	activator	U
CRP	hupBp3	hupB,	dual-activator	-83.5	U	0	activator	U
Lrp	dadAp2	dadX,dadA,	dual-activator	-266.5,-238,-198,-164,-135.5,-104.5	UUUUUU	0	activator	U
FIS	proK	proK,	dual-activator	-76	U	0	activator	U
MelR	melA	melB,melA,	dual-activator	-120.5,-100.5,-62.5,-42.5	UUUU	0	activator	U
Rob	zwf	zwf,	dual-activator	-54	U	0	activator	U
FNR	ansBp2	ansB,	dual-activator	-74.5,-41.5	UU	0	activator	U
CRP	glpF	glpK,glpF,	dual-activator	-60.5,-37.5	UU	0	activator	U
CRP	glpE	glpR,glpG,glpE,	dual-activator	-58.5	U	0	activator	U
FNR	fdnG	fdnI,fdnH,fdnG,	dual-activator	-42.5	U	0	activator	U
FIS	argW	argW,	dual-activator	-74	U	0	activator	U
IHF	hypA	hypE,hypD,hypC,hypB,hypA,	dual-activator	-127.5	U	0	activator	U
CRP	ompBp3	envZ,ompR,	dual-activator	-121	U	0	activator	U
CpxR	yihEp	xxxxxxx	dual-activator	-49	U	0	activator	U
CRP	rhaT	rhaT,	dual-activator	-93.5	U	0	activator	U
CRP	hupAp	hupA,	dual-activator	-63.5	U	0	activator	U
IHF	narG	narJ,narI,narH,narG,	dual-activator	-125	U	0	activator	U
OmpR	ompCp1	ompC,	dual-activator	-86,-66,-46	UUU	0	activator	U
CRP	cpdB	cpdB,	dual-activator	-44	U	0	activator	U
IHF	yiaKp	dual-activator	-49.5	U	0	activator	U
CRP	dadAp2	dadX,dadA,	dual-activator	-60	U	0	activator	U
MetR	metH	metH,	dual-activator	-56	U	0	activator	U
FruR	ptsp1b	crr,ptsI,ptsH,	dual-repressor	-55.5	U	0	repressor	U
PdhR	pdhR	aceF,aceE,pdhR,lpdA,aceF,aceE,pdhR,	dual-repressor	18	D	0	repressor	D
FIS	hupBp2	hupB,	dual-repressor	-208,-185,-152.5,78	UUUD	230.5	repressor	UD
NagC	nagE	nagE,	dual-repressor	-32.5	D	0	repressor	D
AraC	araC	araC,	dual-repressor	-101,-50,-29,107	UUDD	21	repressor	UD
IHF	ompF	ompF,	dual-repressor	-176,-62,	UU	0	repressor	U
CytR	nupG	nupG,	dual-repressor	-65	U	0	repressor	U
CRP	rpoHp3	rpoH,	dual-repressor	-73,-20	UD	53	repressor	UD
TyrR	aroL	yaiA,aroM,aroL,	dual-repressor	-45,12,31	UDD	57	repressor	UD
CRP	cya	cyaA,	dual-repressor	-2	D	0	repressor	D
FruR	pykF	pykF,	dual-repressor	18.5	D	0	repressor	D
Lrp	livJ	livJ,	dual-repressor	-127	U	0	repressor	U
CRP	cddp	dual-repressor	-93	U	0	repressor	U
ArcA	acnAp2	acnA,	dual-repressor	-37.5	U	0	repressor	U
MelR	melR	melR,	dual-repressor	-17.5,2.5	DD	0	repressor	D
NR(I)	glnHp2	glnQ,glnP,glnH,	dual-repressor	-135,-79	UU	0	repressor	U
Lrp	lrp	lrp,	dual-repressor	-56,49	UD	105	repressor	UD
CRP	fadL	fadL,	dual-repressor	57	D	0	repressor	D
CRP	crp	crp,	dual-repressor	42.5	D	0	repressor	D
ArcA	sodA	sodA,	dual-repressor	-7,19	DD	0	repressor	D
NagC	nagB	nagD,nagC,nagA,nagB,	dual-repressor	-8	D	0	repressor	D
Lrp	micFp1	dual-repressor	36,109,140,169,204	DDDDD	0	repressor	D
FruR	pfkA	dual-repressor	-35	D	0	repressor	D
CytR	cytR	dual-repressor	-43	U	0	repressor	U
FNR	ndh	ndh,	dual-repressor	-94.5,-50.5	UU	0	repressor	U
Lrp	dadAp3	dadX,dadA,	dual-repressor	-75,-33.5,-3.5,45.5,67	UDDDD	41.5	repressor	UD
CRP	mlcp1	dual-repressor	-58.5	U	0	repressor	U
NarL	focAp3	pflB,focA,	dual-repressor	-23	D	0	repressor	D
CRP	ptsI	crr,ptsI,ptsH,	dual-repressor	-35.5	U	0	repressor	U
CRP	yhfA	yhfA,	dual-repressor	58.5	D	0	repressor	D
DnaA	dnaAp1	recF,dnaN,dnaA,	dual-repressor	22	D	0	repressor	D
FruR	nirB	cysG,nirC,nirD,nirB,	dual-repressor	-16.5	D	0	repressor	D
TyrR	aroPp2	aroP,	dual-repressor	20.5,43	DD	0	repressor	D
FNR	tpx	dual-repressor	-18.5	D	0	repressor	D
PhoB	ugpp2	dual-repressor	-26.5,-4.5	DD	0	repressor	D
NarL	adhE	adhE,	dual-repressor	-85.5	U	0	repressor	U
Lrp	ompCp3	ompC,	dual-repressor	-319,-284,-255,-224,-151,28,59,121,143	UUUUUDDDD	179	repressor	UD
FruR	adhE	adhE,	dual-repressor	35.5	D	0	repressor	D
FIS	ndh	ndh,	dual-repressor	-72,-51	UU	0	repressor	U
CytR	ppiAp2	ppiA,	dual-repressor	-69	U	0	repressor	U
DnaA	rpoHp4	rpoH,	dual-repressor	-55,-54,-31,-30	UUDD	23	repressor	UD
DnaA	dnaAp2	recF,dnaN,dnaA,	dual-repressor	-57	U	0	repressor	U
CRP	osmY	dual-repressor	-12.5,1.5	DD	0	repressor	D
IHF	ompCp3	ompC,	dual-repressor	-120	U	0	repressor	U
CRP	ompBp4	envZ,ompR,	dual-repressor	-5	D	0	repressor	D
CRP	spf	dual-repressor	-84.5	U	0	repressor	U
CysB	cysB	cysB,	dual-repressor	13	D	0	repressor	D
OmpR	flhD	flhC,flhD,	dual-repressor	-147.5,16.5	UD	164	repressor	UD
TyrR	tyrP	tyrP,	dual-repressor	-39	U	0	repressor	U
TyrR	tyrB	tyrB,	dual-repressor	20,42	DD	0	repressor	D
CRP	ppiAp2	ppiA,	dual-repressor	-95.5	U	0	repressor	U
NarL	napFp1	napH,napG,napF,napC,napB,napA,dsbE,ccmH,ccmF,ccmE,ccmD,ccmC,ccmB,ccmA,napD,	dual-repressor	-44.5	U	0	repressor	U
FIS	fis	yhdG,fis,	dual-repressor	-42	U	0	repressor	U
ArcA	gltAp1	gltA,	dual-repressor	-47	U	0	repressor	U
CytR	rpoHp5	rpoH,	dual-repressor	-65	U	0	repressor	U
OmpR	fadL	fadL,	dual-repressor	-147.5,-60,,67.5,113.5	UUDD	127.5	repressor	UD
IHF	osmE	osmE,	dual-repressor	4.5	D	0	repressor	D
FruR	eddp	eda,edd,	dual-repressor	4.5	D	0	repressor	D
ArcA	nuoAp1	nuoN,nuoM,nuoL,nuoK,nuoJ,nuoI,nuoH,nuoG,nuoF,nuoE,nuoC,nuoB,nuoA,	dual-repressor	-112	U	0	repressor	U
CRP	proPp1	proP,	dual-repressor	-34.5	D	0	repressor	D
OmpR	nmpC	nmpC,	dual-repressor	-38	U	0	repressor	U
FIS	acnB	acnB,	dual-repressor	-171.5,-73.5,-29.5	UUD	44	repressor	UD
NagC	glmUp2	glmS,glmU,	dual-repressor	-97,56	UD	153	repressor	UD
FruR	epd	epd,pgk,	dual-repressor	3.5	D	0	repressor	D
FadR	fadBA	fadA,fadB,	dual-repressor	9	D	0	repressor	D
NR(I)	glnAp1	glnG,glnL,glnA,	dual-repressor	-26,8	DD	0	repressor	D
NarL	dcuBp	dcuB,fumB,dcuB,	dual-repressor	-109,-45,1,19,44	UUDDD	46	repressor	UD
FruR	mtl	mtlR,mtlD,mtlA,	dual-repressor	-22.5	D	0	repressor	D
NarL	adhEp2	adhE,	dual-repressor	-19.5	D	0	repressor	D
ArcA	aldA	aldA,	dual-repressor	-154,-4.5	UD	149.5	repressor	UD
IHF	sodA	sodA,	dual-repressor	-66,-46,-22,2	UUDD	24	repressor	UD
FNR	narX	narX,narL,	dual-repressor	-106.5,-75,107	UUD	182	repressor	UD
FNR	acnAp2	acnA,	dual-repressor	-40.5	U	0	repressor	U
DnaA	guaBA	guaA,guaB,	dual-repressor	248	D	0	repressor	D
ArcA	icdAp1	icdA,	dual-repressor	6.5,15	DD	0	repressor	D
CytR	deop2	deoD,deoB,deoA,deoC,	dual-repressor	-94,-70.5	UU	0	repressor	U
FNR	fnr	fnr,	dual-repressor	-103.5,1	UD	104.5	repressor	UD
ArcA	cyoA	cyoE,cyoD,cyoC,cyoB,cyoA,	dual-repressor	-204	U	0	repressor	U
IlvY	ilvY	ilvY,	dual-repressor	-18,13	DD	0	repressor	D
CRP	ompBp1	ompR,envZ,	dual-repressor	-53	U	0	repressor	U
FNR	sodA	sodA,	dual-repressor	-34	D	0	repressor	D
FNR	hmpA	dual-repressor	5	D	0	repressor	D
CRP	ompA	ompA,	dual-repressor	-32	D	0	repressor	D
Lrp	tdh	kbl,tdh,	dual-repressor	-77	U	0	repressor	U
TyrR	aroF	tyrA,aroF,	dual-repressor	-104,-52,-30	UUD	22	repressor	UD
CytR	ppiAp4	ppiA,	dual-repressor	-15	D	0	repressor	D
CytR	udpP	udp,	dual-repressor	-61	U	0	repressor	U
TorR	torR	torR,	dual-repressor	-3.5,7.5	DD	0	repressor	D
Lrp	ilvGp2	ilvA,ilvD,ilvE,ilvM,ilvG_2,ilvG_1,ilvL,	dual-repressor	167.5,200,232	DDD	0	repressor	D
Lrp	ompCp2	ompC,	dual-repressor	-343,-308,-279,-248,-175,4,35,97,119	UUUUUDDDD	179	repressor	UD
OxyR	oxyR	oxyR,	dual-repressor	-3	D	0	repressor	D
Lrp	dadAp1	dadX,dadA,	dual-repressor	-46,-4.5,26.5,74.5,96	UDDDD	41.5	repressor	UD
FNR	yeiLp	yeiL,	dual-repressor	-28.5	D	0	repressor	D
IHF	ndh	ndh,	dual-repressor	-58,-17,26	UDD	41	repressor	UD
NarL	focAp1	pflB,focA,	dual-repressor	-256.5,-176,-81.5	UUU	0	repressor	U
CRP	malX	malY,malX,	dual-repressor	11	D	0	repressor	D
FadR	uspAp1	uspA,	dual-repressor	5,97	DD	0	repressor	D
DnaA	rpoHp3	rpoH,	dual-repressor	-48,-24	UD	24	repressor	UD
ArcA	betI	betA,betB,betI,	dual-repressor	-73,-3	UD	70	repressor	UD
Lrp	lysUp1	lysU,	dual-repressor	-58	U	0	repressor	U
CRP	ppiAp4	ppiA,	dual-repressor	12.5	D	0	repressor	D
CRP	putPp4	putP,	dual-repressor	-106,-76.5,-44	UUU	0	repressor	U
TyrR	aroG	aroG,	dual-repressor	-38	U	0	repressor	U
IHF	nuoAp1	nuoN,nuoM,nuoL,nuoK,nuoJ,nuoI,nuoH,nuoG,nuoF,nuoE,nuoC,nuoB,nuoA,	dual-repressor	-113	U	0	repressor	U
GcvA	gcvT	gcvP,gcvH,gcvT,	dual-repressor	-52	U	0	repressor	U
AraC	araE	araE,	dual-repressor	-64,-43	UU	0	repressor	U
IHF	osmY	dual-repressor	-5	D	0	repressor	D
AraC	araBAD	araD,araA,araB,	dual-repressor	-274,-64	UU	0	repressor	U
CRP	galp2	galM,galK,galT,galE,	dual-repressor	-36	U	0	repressor	U
OmpR	ompF	ompF,	dual-repressor	-47.5,-46	UU	0	repressor	U
CRP	malI	malI,	dual-repressor	-38	U	0	repressor	U
CytR	rpoHp4	rpoH,	dual-repressor	-51	U	0	repressor	U
FNR	cydAp1	cydB,cydA,	dual-repressor	-2	D	0	repressor	D
CRP	xseAp	dual-repressor	28.5	D	0	repressor	D
NagC	manX	manZ,manY,manX,	dual-repressor	-79,-13	UD	66	repressor	UD
FIS	hupBp3	hupB,	dual-repressor	-145,-122,-89.5,141	UUUD	230.5	repressor	UD
TyrR	aroP	aroP,	dual-repressor	41,64	DD	0	repressor	D
ArcA	sdhC	sucD,sucC,sucB,sucA,b0725,sdhB,sdhA,sdhD,sdhC,	dual-repressor	-17,257	DD	0	repressor	D
ArcA	acnB	acnB,	dual-repressor	-172.5,-166.5,-137.5,-122.5,-118.5,-60.5,-51.5	UUUUUUU	0	repressor	U
CRP	nupG	nupG,	dual-repressor	-40.5	U	0	repressor	U
CRP	rpoHp4	rpoH,	dual-repressor	-80,-27	UD	53	repressor	UD
IHF	himAp4	himA,	dual-repressor	-76.5,-26,-10	UDD	50.5	repressor	UD
GcvA	gcvA	gcvA,	dual-repressor	-4	D	0	repressor	D
NarL	frd	frdD,frdC,frdB,frdA,	dual-repressor	-4.5,6.5	DD	0	repressor	D
IHF	ompBp1	ompR,envZ,	dual-repressor	-102,-37,8	UUD	45	repressor	UD
SoxR	soxR	soxR,	dual-repressor	2	D	0	repressor	D
IHF	nmpC	nmpC,	dual-repressor	-144	U	0	repressor	U
NR(I)	glnL	glnG,glnL,	dual-repressor	-1	D	0	repressor	D
ArcA	tpx	dual-repressor	-25.5	D	0	repressor	D
FNR	arcAp3	arcA,	dual-repressor	-56.5	U	0	repressor	U
FNR	hemAp2	dual-repressor	-23.5	D	0	repressor	D
Lrp	osmCp1	dual-repressor	-52	U	0	repressor	U
CytR	tsxp2	tsx,	dual-repressor	-48	U	0	repressor	U
TyrR	tyrR	tyrR,	dual-repressor	-50	U	0	repressor	U
Lrp	dadAp2	dadX,dadA,	dual-repressor	-62,-20.5,10.5,58.5,80	UDDDD	42	repressor	UD
ArcA	betT	betT,	dual-repressor	-1,14	DD	0	repressor	D
CytR	cddp	dual-repressor	-64.5	U	0	repressor	U
Lrp	oppA	oppF,oppD,oppC,oppB,oppA,	dual-repressor	-205	U	0	repressor	U
CytR	ppiAp3	ppiA,	dual-repressor	-34	D	0	repressor	D
FIS	aldB	aldB,	dual-repressor	-158,-137,-113,-50,-29	UUUUD	21	repressor	UD
FadR	fadL	fadL,	dual-repressor	-17,9	DD	0	repressor	D
Lrp	ompCp1	ompC,	dual-repressor	-376,-341,-312,-281,-208,-34,2,64,86	UUUUUDDDD	174	repressor	UD
CRP	ppiAp3	ppiA,	dual-repressor	-7.5	D	0	repressor	D
Lrp	osmY	dual-repressor	-186,-149	UU	0	repressor	U
IHF	ompCp1	ompC,	dual-repressor	-176	U	0	repressor	U
FNR	nuoAp1	nuoN,nuoM,nuoL,nuoK,nuoJ,nuoI,nuoH,nuoG,nuoF,nuoE,nuoC,nuoB,nuoA,	dual-repressor	-40.5	U	0	repressor	U
CRP	yiaJ	yiaJ,	dual-repressor	51	D	0	repressor	D
ArcA	mdh	mdh,	dual-repressor	21	D	0	repressor	D
NarL	dmsA	dmsC,dmsB,dmsA,	dual-repressor	-34.5,-14.5,7.5	DDD	0	repressor	D
CynR	cynR	cynR,	dual-repressor	-11	D	0	repressor	D
CRP	trxAp1	dual-repressor	-23	D	0	repressor	D
IHF	ilvGp1	ilvA,ilvD,ilvE,ilvM,ilvG_2,ilvG_1,ilvL,	dual-repressor	-69,-19	UD	50	repressor	UD
CytR	rpoHp3	rpoH,	dual-repressor	-44	U	0	repressor	U
MarR	marR	marB,marA,marR,	repressor-only	-19,17	DD	0	repressor	D
DeoR	tsxp1	tsx,	repressor-only	-7.5	D	0	repressor	D
ArgR	argI	argI,	repressor-only	-23,-2	DD	0	repressor	D
LexA	recA	recA,	repressor-only	-21	D	0	repressor	D
LexA	sulA	sulA,	repressor-only	-2	D	0	repressor	D
GalR	galp2	galM,galK,galT,galE,	repressor-only	-56,48	UD	104	repressor	UD
Mlc	malT	malT,	repressor-only	12	D	0	repressor	D
MetJ	metF	metF,	repressor-only	-8.5,4.5,20.5	DDD	0	repressor	D
GalS	galS	galS,	repressor-only	-61.5,92.5	UD	154	repressor	UD
DeoR	deop2	deoD,deoB,deoA,deoC,	repressor-only	-887,-308,-8	UUD	300	repressor	UD
IclR	aceBAK	aceB,aceK,aceA,	repressor-only	-40	U	0	repressor	U
Fur	cirp2	cirA,	repressor-only	-19,-13	DD	0	repressor	D
PurR	glnBp2	glnB,	repressor-only	20.5	D	0	repressor	D
PurR	purM	purN,purM,	repressor-only	-28	D	0	repressor	D
LexA	uvrBp2	uvrB,	repressor-only	-21	D	0	repressor	D
LexA	rpsUp3	rpsU,rpoD,dnaG,rpsU,	repressor-only	4.5	D	0	repressor	D
PurR	purFp1	ubiX,purF,cvpA,	repressor-only	-28.5	D	0	repressor	D
LexA	uvrD	uvrD,	repressor-only	11	D	0	repressor	D
GalR	galp1	galM,galK,galT,galE,	repressor-only	-61,43	UD	104	repressor	UD
DeoR	deop1	deoD,deoB,deoA,deoC,	repressor-only	-608,-8,269	UDD	600	repressor	UD
Fur	furpb	repressor-only	1.5	D	0	repressor	D
BirA	bioB	bioD,bioC,bioF,bioB,	repressor-only	-20	D	0	repressor	D
GcvA	gcvT	gcvP,gcvH,gcvT,	repressor-only	-52	U	0	repressor	U
LexA	phrB	phrB,	repressor-only	25.5	D	0	repressor	D
GlpR	glpF	glpK,glpF,	repressor-only	-79.5,-58.5,-37.5,-17.5,1002.5,1044.5	UUUDDD	20	repressor	UD
GntR	gntTp	gntT,	repressor-only	-14,127	DD	0	repressor	D
Fur	tonB	tonB,	repressor-only	-22,26	DD	0	repressor	D
PurR	gcvT	gcvP,gcvH,gcvT,	repressor-only	-7	D	0	repressor	D
PurR	pyrD	pyrD,	repressor-only	-57.5	U	0	repressor	U
PurR	purE	purK,purE,	repressor-only	-36	U	0	repressor	U
ArgR	argF	argF,	repressor-only	-23,-2	DD	0	repressor	D
PurR	purC	purC,	repressor-only	2	D	0	repressor	D
GntR	eddp	eda,edd,	repressor-only	-93,129	UD	222	repressor	UD
Fur	fepA	entD,fepA,	repressor-only	5	D	0	repressor	D
PurR	guaBA	guaA,guaB,	repressor-only	-24.5	D	0	repressor	D
GlpR	glpACB	glpB,glpC,glpA,	repressor-only	-51.5,-18.5,2.5,42.5	UDDD	33	repressor	UD
LexA	uvrA	uvrA,	repressor-only	-33	D	0	repressor	D
GlpR	glpTQ	glpQ,glpT,	repressor-only	-173.5,-133.5,-113.5,-81.5,-36	UUUUU	0	repressor	U
GcvA	gcvA	gcvA,	repressor-only	-4	D	0	repressor	D
PurR	ycfCp	purB,ycfC,	repressor-only	837.5	D	0	repressor	D
ArgR	argRp1	argR,	repressor-only	-29,-7	DD	0	repressor	D
PurR	purL	purL,	repressor-only	-38	U	0	repressor	U
Fur	fes	repressor-only	-24	D	0	repressor	D
Fur	sodA	sodA,	repressor-only	-37.5,-30.5	UD	7	repressor	UD
LacI	lac	lacA,lacY,lacZ,	repressor-only	-84,9,411	UDD	93	repressor	UD
TrpR	aroH	aroH,	repressor-only	-37	U	0	repressor	U
ArgR	argCBH	argH,argB,argC,	repressor-only	-2,19	DD	0	repressor	D
TrpR	trpR	trpR,	repressor-only	1	D	0	repressor	D
BetI	betI	betA,betB,betI,	repressor-only	-32	D	0	repressor	D
Fur	fhuA	fhuB,fhuD,fhuC,fhuA,	repressor-only	-2	D	0	repressor	D
Mlc	mlcp1	repressor-only	16	D	0	repressor	D
LctR	lctPp2	lctD,lctR,lctP,	repressor-only	32	D	0	repressor	D
TrpR	mtr	mtr,	repressor-only	-21	D	0	repressor	D
TrpR	trp	trpL,trpA,trpB,trpC,trpD,trpE,	repressor-only	-15	D	0	repressor	D
PurR	pyrC	pyrC,	repressor-only	-23.5	D	0	repressor	D
ArgR	argE	argE,	repressor-only	-14,7	DD	0	repressor	D
BirA	bioA	bioA,	repressor-only	10	D	0	repressor	D
LexA	ssb	ssb,	repressor-only	-48	U	0	repressor	U
PurR	purH	purD,purH,	repressor-only	-21	D	0	repressor	D
GlpR	glpD	glpD,	repressor-only	1,20,415.5,456.5	DDDD	0	repressor	D
LexA	lexA	dinF,lexA,	repressor-only	-10,10	DD	0	repressor	D
MetJ	metAp1	metA,	repressor-only	4.5,20.5	DD	0	repressor	D
Fur	cirp1	cirA,	repressor-only	-32,-26	DD	0	repressor	D
PurR	glnBp1	glnB,	repressor-only	-42.5	U	0	repressor	U
ArgR	carAp2	carA,carB,	repressor-only	-9,14	DD	0	repressor	D
PurR	glyA	glyA,	repressor-only	-60.5	U	0	repressor	U
MalI	malI	malI,	repressor-only	-62.5,16.5	UD	79	repressor	UD
MalI	malX	malY,malX,	repressor-only	-42.5,37.5	UD	80	repressor	UD
Mlc	mlcp2	repressor-only	4	D	0	repressor	D
YiaJ	yiaKp	repressor-only	-13	D	0	repressor	D
BetI	betT	betT,	repressor-only	-30	D	0	repressor	D
PurR	purR	purR,	repressor-only	104,192	DD	0	repressor	D
TrpR	aroL	yaiA,aroM,aroL,	repressor-only	56.5	D	0	repressor	D
Fur	furpa	fur,	repressor-only	-6.5	D	0	repressor	D
Mlc	manX	manZ,manY,manX,	repressor-only	-79,-13	UD	66	repressor	UD