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It is experimentally confirmed that H-NS binds to the promoter regions of the following genes. Three different search algorithms were used to measure the occurence of the previously determined binding motif within these sequences.
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| MAST (MEME) - 4 matches |
| Gene | Position | Score | Orientation |
| htdA | 577 | 1.96E-05 | + |
| proU-NRE | 89 | 1.37E-05 | - |
| proU-NRE | 196 | 1.37E-05 | - |
| No matches in: bgl, flgA/B, flgA/B-2, spvR, traH, traJ |
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| MotifScanner - 6 matches |
| Gene | Position | Score | Orientation |
| htdA | 157 | 446.413 | - |
| htdA | 577 | 1371.73 | + |
| proU-NRE | 89 | 4483.18 | - |
| spvR | 538 | 691.107 | - |
| No matches in: bgl, flgA/B, flgA/B-2, traH, traJ |
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| ScanACE - 14 matches |
| Gene | Position | Score | Orientation |
| bgl | 37 | 8.65874 | + |
| bgl | 645 | 9.24311 | + |
| bgl | 647 | 9.05699 | - |
| bgl | 1134 | 8.83463 | + |
| flgA/B | 189 | 8.72171 | + |
| flgA/B | 540 | 8.75495 | - |
| flgA/B-2 | 1006 | 9.31851 | - |
| htdA | 157 | 10.0147 | - |
| htdA | 372 | 8.76344 | + |
| htdA | 577 | 11.4403 | + |
| proU-NRE | 89 | 11.6378 | - |
| proU-NRE | 196 | 11.6378 | - |
| spvR | 538 | 9.86753 | - |
| No matches in: traH, traJ |
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| Sequences used (FASTA, 9 in total) |
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