Statistics on the number of predicted lipoproteins for completely sequenced bacterial genomes


Genome
Predicted number of lipoproteins
Predicted number of ORFs
Fraction of genome coding for lipoproteins
Acinetobacter sp. ADP1
68
3325
2.04
Agrobacterium tumefaciens C58
29
4548
0.63
Anaplasma marginale St. Maries
8
949
0.84
Aquifex aeolicus VF5
9
1529
0.58
Azoarcus sp. EbN1
41
4133
0.99
Bacillus anthracis Ames Ancestor
110
5309
2.07
Bacillus anthracis Ames
110
5311
2.07
Bacillus anthracis Sterne
111
5287
2.09
Bacillus cereus ATCC 10987
113
5603
2.01
Bacillus cereus ATCC 14579
105
5234
2
Bacillus cereus E33L
115
5134
2.23
Bacillus clausii KSM-K16
108
4096
2.63
Bacillus halodurans C-125
107
4066
2.63
Bacillus licheniformis ATCC 14580
72
4152
1.73
Bacillus licheniformis ATCC 14580
73
4196
1.73
Bacillus subtilis ssp. subtilis 168
70
4105
1.7
Bacillus thuringiensis ser. konkukian 97-27
121
5117
2.36
Bacteroides fragilis NCTC 9343
177
4189
4.22
Bacteroides fragilis YCH46
184
4578
4.01
Bacteroides thetaiotaomicron VPI-5482
223
4778
4.66
Bartonella henselae Houston-1
36
1488
2.41
Bartonella quintana Toulouse
18
1142
1.57
Bdellovibrio bacteriovorus HD100
147
3587
4.09
Bifidobacterium longum NCC2705
26
1727
1.5
Bordetella bronchiseptica RB50
83
4994
1.66
Bordetella parapertussis 12822
65
4185
1.55
Bordetella pertussis Tohama I
53
3436
1.54
Borrelia burgdorferi B31
8
851
0.94
Borrelia garinii PBi
8
832
0.96
Bradyrhizobium japonicum USDA 110
45
8317
0.54
Brucella abortus biov. 1 9-941
33
3085
1.06
Brucella melitensis 16M
22
3198
0.68
Brucella suis 1330
35
3271
1.07
Buchnera aphidicola APS
0
564
0
Buchnera aphidicola Bp
1
504
0.19
Buchnera aphidicola Sg
0
546
0
Burkholderia mallei ATCC 23344
65
4764
1.36
Burkholderia pseudomallei K96243
93
5728
1.62
Campylobacter jejuni RM1221
22
1838
1.19
Campylobacter jejuni ssp. jejuni NCTC 11168
22
1629
1.35
Candidatus Blochmannia floridanus
2
583
0.34
Candidatus Blochmannia pennsylvanicus BPEN
3
610
0.49
Candidatus Pelagibacter ubique HTCC1062
14
1354
1.03
Caulobacter crescentus CB15
61
3737
1.63
Chlamydia muridarum Nigg
18
904
1.99
Chlamydia trachomatis D/UW-3/CX
14
895
1.56
Chlamydophila abortus S26/3
19
932
2.03
Chlamydophila caviae GPIC
16
998
1.6
Chlamydophila pneumoniae AR39
15
1112
1.34
Chlamydophila pneumoniae CWL029
16
1052
1.52
Chlamydophila pneumoniae J138
16
1069
1.49
Chlamydophila pneumoniae TW-183
14
1113
1.25
Chlorobium tepidum TLS
15
2252
0.66
Chromobacterium violaceum ATCC 12472
84
4407
1.9
Clostridium acetobutylicum ATCC 824
45
3672
1.22
Clostridium perfringens 13
46
2660
1.72
Clostridium tetani E88
21
2373
0.88
Colwellia psychrerythraea 34H
139
4910
2.83
Corynebacterium diphtheriae NCTC 13129
42
2272
1.84
Corynebacterium efficiens YS-314
43
2950
1.45
Corynebacterium glutamicum ATCC 13032
84
3057
2.74
Corynebacterium glutamicum ATCC 13032
78
2993
2.6
Corynebacterium jeikeium K411
24
2137
1.12
Coxiella burnetii RSA 493
25
2010
1.24
Dechloromonas aromatica RCB
81
4171
1.94
Dehalococcoides ethenogenes 195
18
1580
1.13
Dehalococcoides sp. CBDB1
13
1458
0.89
Deinococcus radiodurans R1
45
2997
1.5
Desulfotalea psychrophila LSv54
44
3116
1.41
Desulfovibrio vulgaris ssp. vulgaris Hildenborough
38
3379
1.12
Ehrlichia canis Jake
14
925
1.51
Ehrlichia ruminantium Gardel
6
950
0.63
Ehrlichia ruminantium Welgevonden
6
958
0.62
Ehrlichia ruminantium Welgevonden
9
888
1.01
Enterococcus faecalis V583
64
3113
2.05
Erwinia carotovora ssp. atroseptica SCRI1043
112
4472
2.5
Escherichia coli CFT073
86
5379
1.59
Escherichia coli K12
86
4237
2.02
Escherichia coli O157:H7
116
5253
2.2
Escherichia coli O157:H7 EDL933
98
5324
1.84
Francisella tularensis ssp. tularensis SCHU S4
38
1603
2.37
Fusobacterium nucleatum ssp. nucleatum ATCC 25586
27
2067
1.3
Geobacillus kaustophilus HTA426
61
3498
1.74
Geobacter sulfurreducens PCA
56
3446
1.62
Gloeobacter violaceus PCC 7421
37
4430
0.83
Gluconobacter oxydans 621H
41
2432
1.68
Haemophilus ducreyi 35000HP
41
1717
2.38
Haemophilus influenzae 86-028NP
44
1791
2.45
Haemophilus influenzae Rd KW20
39
1657
2.35
Helicobacter hepaticus ATCC 51449
19
1875
1.01
Helicobacter pylori 26695
14
1576
0.88
Helicobacter pylori J99
16
1491
1.07
Idiomarina loihiensis L2TR
73
2628
2.77
Lactobacillus acidophilus NCFM
36
1864
1.93
Lactobacillus johnsonii NCC 533
25
1821
1.37
Lactobacillus plantarum WCFS1
51
3009
1.69
Lactococcus lactis ssp. lactis Il1403
32
2321
1.37
Legionella pneumophila Lens
45
2878
1.56
Legionella pneumophila Paris
47
3027
1.55
Legionella pneumophila ssp. pneumophila Philadelphia 1
40
2942
1.35
Leifsonia xyli ssp. xyli CTCB07
24
2030
1.18
Leptospira interrogans ser. Copenhageni Fiocruz L1-130
25
3658
0.68
Leptospira interrogans ser. Lai 56601
23
4727
0.48
Listeria innocua Clip11262
62
2968
2.08
Listeria monocytogenes 4b F2365
58
2821
2.05
Listeria monocytogenes EGD-e
63
2846
2.21
Mannheimia succiniciproducens MBEL55E
51
2380
2.14
Mesoplasma florum L1
21
682
3.07
Mesorhizobium loti MAFF303099
50
6743
0.74
Methylococcus capsulatus Bath
49
2959
1.65
Mycobacterium avium ssp. paratuberculosis K-10
49
4350
1.12
Mycobacterium bovis AF2122/97
50
3920
1.27
Mycobacterium leprae TN
16
1605
0.99
Mycobacterium tuberculosis CDC1551
43
4189
1.02
Mycobacterium tuberculosis H37Rv
51
3991
1.27
Mycoplasma gallisepticum R
14
726
1.92
Mycoplasma genitalium G-37
11
484
2.27
Mycoplasma hyopneumoniae 232
9
691
1.3
Mycoplasma hyopneumoniae 7448
7
663
1.05
Mycoplasma hyopneumoniae J
8
665
1.2
Mycoplasma mobile 163K
19
633
3
Mycoplasma mycoides ssp. mycoides SC PG1
40
1016
3.93
Mycoplasma penetrans HF-2
60
1037
5.78
Mycoplasma pneumoniae M129
38
689
5.51
Mycoplasma pulmonis UAB CTIP
23
782
2.94
Mycoplasma synoviae 53
5
672
0.74
Neisseria gonorrhoeae FA 1090
58
2002
2.89
Neisseria meningitidis MC58
69
2079
3.31
Neisseria meningitidis Z2491
62
2065
3
Nitrobacter winogradskyi Nb-255
20
3122
0.64
Nitrosomonas europaea ATCC 19718
44
2461
1.78
Nocardia farcinica IFM 10152
63
5683
1.1
Nostoc sp. PCC 7120
40
5366
0.74
Oceanobacillus iheyensis HTE831
107
3500
3.05
Onion yellows phytoplasma OY-M
3
754
0.39
Parachlamydia sp. UWE25
16
2031
0.78
Pasteurella multocida ssp. multocida Pm70
53
2015
2.63
Photobacterium profundum SS9
104
5424
1.91
Photorhabdus luminescens ssp. laumondii TTO1
73
4683
1.55
Porphyromonas gingivalis W83
26
1909
1.36
Prochlorococcus marinus MIT 9313
16
2265
0.7
Prochlorococcus marinus NATL2A
12
1890
0.63
Prochlorococcus marinus ssp. marinus CCMP1375
12
1882
0.63
Prochlorococcus marinus ssp. pastoris CCMP1986
9
1712
0.52
Propionibacterium acnes KPA171202
50
2297
2.17
Pseudomonas aeruginosa PAO1
113
5567
2.02
Pseudomonas fluorescens Pf-5
141
6137
2.29
Pseudomonas putida KT2440
74
5350
1.38
Pseudomonas syringae pv. phaseolicola 1448A
94
4982
1.88
Pseudomonas syringae pv. syringae B728a
113
5090
2.22
Pseudomonas syringae pv. tomato DC3000
101
5470
1.84
Psychrobacter arcticum 273-4
44
2120
2.07
Ralstonia eutropha JMP134
97
5846
1.65
Ralstonia solanacearum GMI1000
47
3440
1.36
Rhodopirellula baltica SH 1
46
7325
0.62
Rhodopseudomonas palustris CGA009
36
4813
0.74
Rickettsia conorii Malish 7
16
1374
1.16
Rickettsia felis URRWXCal2
19
1400
1.35
Rickettsia prowazekii Madrid E
9
835
1.07
Rickettsia typhi Wilmington
10
838
1.19
Salmonella enterica ssp. enterica ser. Choleraesuis
94
4445
2.11
Salmonella enterica ssp. enterica ser. Paratyphi A ATCC
103
4093
2.51
Salmonella enterica ssp. enterica ser. Typhi CT18
101
4395
2.29
Salmonella enterica ssp. enterica ser. Typhi Ty2
101
4318
2.33
Salmonella typhimurium LT2
104
4425
2.35
Shewanella oneidensis MR-1
95
4324
2.19
Shigella flexneri 2a 2457T
73
4068
1.79
Shigella flexneri 2a 301
76
4182
1.81
Shigella sonnei Ss046
81
4223
1.91
Silicibacter pomeroyi DSS-3
42
3810
1.1
Sinorhizobium meliloti 1021
33
3341
0.98
Staphylococcus aureus ssp. aureus COL
47
2615
1.79
Staphylococcus aureus ssp. aureus MRSA252
50
2656
1.88
Staphylococcus aureus ssp. aureus MSSA476
49
2579
1.89
Staphylococcus aureus ssp. aureus Mu50
55
2697
2.03
Staphylococcus aureus ssp. aureus MW2
49
2632
1.86
Staphylococcus aureus ssp. aureus N315
53
2588
2.04
Staphylococcus epidermidis ATCC 12228
42
2419
1.73
Staphylococcus epidermidis RP62A
45
2494
1.8
Staphylococcus haemolyticus JCSC1435
40
2676
1.49
Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305
36
2446
1.47
Streptococcus agalactiae 2603V/R
31
2124
1.45
Streptococcus agalactiae NEM316
32
2094
1.52
Streptococcus mutans UA159
25
1960
1.27
Streptococcus pneumoniae R6
31
2043
1.51
Streptococcus pneumoniae TIGR4
37
2094
1.76
Streptococcus pyogenes M1 GAS
27
1697
1.59
Streptococcus pyogenes MGAS10394
24
1886
1.27
Streptococcus pyogenes MGAS315
28
1865
1.5
Streptococcus pyogenes MGAS5005
29
1865
1.55
Streptococcus pyogenes MGAS6180
28
1894
1.47
Streptococcus pyogenes MGAS8232
28
1845
1.51
Streptococcus pyogenes SSI-1
24
1861
1.28
Streptococcus thermophilus CNRZ1066
21
1915
1.09
Streptococcus thermophilus LMG 18311
22
1889
1.16
Streptomyces avermitilis MA-4680
80
7577
1.05
Streptomyces coelicolor A3(2)
96
7769
1.23
Symbiobacterium thermophilum IAM 14863
55
3337
1.64
Synechococcus elongatus PCC 6301
18
2525
0.71
Synechococcus sp. WH 8102
16
2517
0.63
Synechocystis sp. PCC 6803
24
3167
0.75
Thermoanaerobacter tengcongensis MB4
32
2588
1.23
Thermobifida fusca YX
25
3110
0.8
Thermosynechococcus elongatus BP-1
11
2475
0.44
Thermotoga maritima MSB8
16
1858
0.86
Thermus thermophilus HB27
20
1982
1
Thermus thermophilus HB8
23
1973
1.16
Thiobacillus denitrificans ATCC 25259
44
2827
1.55
Treponema denticola ATCC 35405
52
2767
1.87
Treponema pallidum ssp. pallidum Nichols
16
1036
1.54
Tropheryma whipplei TW08/27
9
783
1.14
Tropheryma whipplei Twist
9
808
1.11
Ureaplasma parvum ser. 3 ATCC 700970
16
614
2.6
Vibrio cholerae O1 biov. eltor N16961
54
3835
1.4
Vibrio fischeri ES114
104
3747
2.77
Vibrio parahaemolyticus RIMD 2210633
118
4832
2.44
Vibrio vulnificus CMCP6
86
4488
1.91
Vibrio vulnificus YJ016
101
4955
2.03
Wigglesworthia glossinidia
3
611
0.49
Wolbachia endosymbiont TRS of Brugia malayi
4
805
0.49
Wolbachia
5
1195
0.41
Wolinella succinogenes DSM 1740
18
2043
0.88
Xanthomonas axonopodis pv. citri 306
92
4312
2.13
Xanthomonas campestris pv. campestris 8004
101
4273
2.36
Xanthomonas campestris pv. campestris ATCC 33913
95
4181
2.27
Xanthomonas oryzae pv. oryzae KACC10331
58
4637
1.25
Xylella fastidiosa 9a5c
47
2766
1.69
Xylella fastidiosa Temecula1
43
2034
2.11
Yersinia pestis biov. Medievalis 91001
54
3895
1.38
Yersinia pestis CO92
72
3885
1.85
Yersinia pestis KIM
54
4086
1.32
Yersinia pseudotuberculosis IP 32953
69
3901
1.76
Zymomonas mobilis ssp. mobilis ZM4
21
1998
1.05

References

  • Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
  • Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

 

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005