DOLOP - A Database of Bacterial Lipoproteins

Toxins

Features:

Click on the Swiss-Prot ID to get a niceprot entry for the protein from Swiss-Prot

Click on the SUPERFAMILY to get functional domain assignment for the sequence from SUPERFAMILY

Click on the Description to get the PDB entry

Click on the Type identifier to get the BLAST output from http://www.expasy.org/

Representation of the Type Identifier:

A   - Antigens
Ad  - Adhesins
B   - Binding Proteins
E   - Enzymes
T   - Transporters
Tx  - Toxin
S   - Structural Proteins
If  - Interesting Factors - basically non classifiable
H   - Hypothetical lipoproteins

Swiss-Prot ID	MEDLINE reference and Superfa mily domain assignment	Description	Length	Type
Q9Z731	Ref(E) Superfamily	Probable lipoprotein CPn0875/CP0994/CPj0875 precursor.	217	Tx
Q9PHM1	Ref(E) Superfamily	RlpA-like lipoprotein precursor.	275	Tx
Q9K0B1	Ref(E) Superfamily	Competence lipoprotein comL precursor.	267	Tx
P56551	Ref(E) Superfamily	Entericidin A Precursor.	44	Tx
P56550	Ref(E) Superfamily	Entericidin B Precursor.	48	Tx
P29481	Ref(E) Superfamily	Toxin Corregulated Pilus Biosynthesis Outer Membrane Protein C. [P]	489	Tx
P24019	Ref(E) Superfamily	Toxr-Activated Gene A Lipoprotein Precursor.	1002	Tx
O87120	Ref(E) Superfamily	Cytolethal Distending Toxin Subunit A Precursor (Cdt A).	222	Tx

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References

Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005