DOLOP - A Database of Bacterial Lipoproteins

Transporters

Features:

Click on the Swiss-Prot ID to get a niceprot entry for the protein from Swiss-Prot

Click on the SUPERFAMILY to get functional domain assignment for the sequence from SUPERFAMILY

Click on the Description to get the PDB entry

Click on the Type identifier to get the BLAST output from http://www.expasy.org/

Representation of the Type Identifier:

A   - Antigens
Ad  - Adhesins
B   - Binding Proteins
E   - Enzymes
T   - Transporters
Tx  - Toxin
S   - Structural Proteins
If  - Interesting Factors - basically non classifiable
H   - Hypothetical lipoproteins

Swiss-Prot ID	MEDLINE reference and Superfa mily domain assignment	Description	Length	Type
Q8Z5G4	Ref(E) Superfamily	Putative polysaccharide export protein wza precursor.	379	T
Q56247	Ref(E) Superfamily	Cytochrome C-551 Precursor (C551).	111	T
Q49410	Ref(E) Superfamily	High Affinity Transport System Protein P37 Precursor.	368	T
Q46629	Ref(E) Superfamily	Amylovoran Export Outer Membrane Protein Amsh Precursor.	377	T
Q45407	Ref(E) Superfamily	Eps I Polysaccharide Export Outer Membrane Protein Epsa Precursor.	377	T
Q06083	Ref(E) Superfamily	Lipoprotein Mxim Precursor.	142	T
Q06081	Ref(E) Superfamily	Lipoprotein Mxij Precursor.	241	T
Q04976	Ref(E) Superfamily	Vi Polysaccharide Export Protein Vexa/Tvif Precursor.	355	T
Q02112	Ref(E) Superfamily	Membrane-Bound Protein Lyta Precursor.	102	T
Q01567	Ref(E) Superfamily	Outs Protein Precursor.	133	T
Q01251	Ref(E) Superfamily	Yop Proteins Translocation Lipoprotein J Precursor (Ylpb Lipoprotein).	244	T
P82599	Ref(E) Superfamily	Cytochrome C-553 (C553).	92	T
P80152	Ref(E) Superfamily	Hrpb3 Protein Precursor.	253	T
P74852	Ref(E) Superfamily	Secretion System Apparatus Lipoprotein Ssaj Precursor.	249	T
P58597	Ref(E) Superfamily	EPS I polysaccharide export outer membrane protein epsA precursor.	381	T
P58337	Ref(E) Superfamily	Putative conjugal transfer lipoprotein XFa0011.1 precursor.	63	T
P52477	Ref(E) Superfamily	Multidrug Resistance Protein Mexa Precursor.	383	T
P52103	Ref(E) Superfamily	Curli Production Assembly/Transport Component Csgg Precursor.	277	T
P41786	Ref(E) Superfamily	Prgk Protein Precursor.	252	T
P40710	Ref(E) Superfamily	Copper Homeostasis Protein Cutf Precursor (Lipoprotein Nlpe).	236	T
P32758	Ref(E) Superfamily	Capsule Polysaccharide Export Outer Membrane Protein Ctra Precursor.	387	T
P31223	Ref(E) Superfamily	Acriflavine Resistance Protein A Precursor.	397	T
P29041	Ref(E) Superfamily	General Secretion Pathway Protein D Precursor.	759	T
P24327	Ref(E) Superfamily	Protein Export Protein Prsa Precursor.	292	T
P24180	Ref(E) Superfamily	Acriflavine Resistance Protein E Precursor (Protein Envc).	385	T
P24126	Ref(H) Superfamily	Fusaric Acid Resistance Protein Fusa Precursor.	530	T
P22236	Ref(E) Superfamily	Capsule Polysaccharide Export Protein Bexd Precursor.	394	T
P06109	Ref(E) Superfamily	Xp55 Protein Precursor.	542	T

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References

Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005