DOLOP - A Database of Bacterial Lipoproteins

Interesting Factors

Features:

Click on the Swiss-Prot ID to get a niceprot entry for the protein from Swiss-Prot

Click on the SUPERFAMILY to get functional domain assignment for the sequence from SUPERFAMILY

Click on the Description to get the PDB entry

Click on the Type identifier to get the BLAST output from http://www.expasy.org/

Representation of the Type Identifier:

A   - Antigens
Ad  - Adhesins
B   - Binding Proteins
E   - Enzymes
T   - Transporters
Tx  - Toxin
S   - Structural Proteins
If  - Interesting Factors - basically non classifiable
H   - Hypothetical lipoproteins

Swiss-Prot ID	MEDLINE reference and Superfa mily domain assignment	Description	Length	Type
Q44743	Ref(E) Superfamily	Basic Membrane Protein D Precursor.	341	If
Q08429	Ref(E) Superfamily	Kinase Associated Protein B - KapB.	128	If
Q02219	Ref(E) Superfamily	Major Outer Membrane Protein Pan 1 Precursor.	392	If
Q01625	Ref(E) Superfamily	Stage III Sporulation Protein J Precursor.	261	If
P77330	Ref(E) Superfamily	Bor Protein Homolog From Lambdoid Prophage Dlp12 Precursor.	97	If
P55741	Ref(E) Superfamily	Outer Membrane Lipoprotein Slyb Precursor.	155	If
P54916	Ref(E) Superfamily	Conjugal Transfer Protein Trbh Precursor.	159	If
P49941	Ref(E) Superfamily	Spore Germination Protein Kc Precursor.	407	If
P43505	Ref(E) Superfamily	Membrane Fusion Protein Mtrc Precursor.	412	If
P43262	Ref(E) Superfamily	Vacj Lipoprotein Precursor.	251	If
P41069	Ref(E) Superfamily	Trav Protein Precursor.	171	If
P39571	Ref(E) Superfamily	Spore Germination Protein B3 Precursor.	374	If
P37966	Ref(E) Superfamily	Lipoprotein Lpla Precursor.	502	If
P33209	Ref(E) Superfamily	Nodulation Protein Nolt Precursor.	289	If
P27461	Ref(E) Superfamily	Ylpa Lipoprotein Precursor.	245	If
P24145	Ref(E) Superfamily	Nodulation Protein T Precursor.	467	If
P23933	Ref(E) Superfamily	Osmotically Inducible Lipoprotein E Precursor (Activator Of Ntr-Like\|Gene).	112	If
P19215	Ref(E) Superfamily	Spiralin.	240	If
P17873	Ref(E) Superfamily	Osmotically Inducible Lipoprotein B Precursor.	72	If
P17323	Ref(E) Superfamily	Lipopeptide Precursor.	46	If
P16450	Ref(E) Superfamily	Spore Germination Protein Gerd Precursor.	185	If
P10101	Ref(E) Superfamily	Rare Lipoprotein B Precursor.	193	If
P10100	Ref(E) Superfamily	Rare Lipoprotein A Precursor.	362	If
P07870	Ref(E) Superfamily	Spore Germination Protein A3 Precursor.	373	If
O50169	Ref(E) Superfamily	Basic Membrane Protein C Precursor.	353	If
O32436	Ref(E) Superfamily	Transcriptional Activator Protein Med Precursor.	317	If

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References

Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005