DOLOP - A Database of Bacterial Lipoproteins

Enzymes

Features:

Click on the Swiss-Prot ID to get a niceprot entry for the protein from Swiss-Prot

Click on the SUPERFAMILY to get functional domain assignment for the sequence from SUPERFAMILY

Click on the Description to get the PDB entry

Click on the Type identifier to get the BLAST output from http://www.expasy.org/

Representation of the Type Identifier:

A   - Antigens
Ad  - Adhesins
B   - Binding Proteins
E   - Enzymes
T   - Transporters
Tx  - Toxin
S   - Structural Proteins
If  - Interesting Factors - basically non classifiable
H   - Hypothetical lipoproteins

Swiss-Prot ID	MEDLINE reference and Superfa mily domain assignment	Description	Length	Type
Q9KPQ4	Ref(E) Superfamily	Membrane-Bound Lytic Murein Transglycosylase A Precursor (Ec 3.2.1.-).	368	E
Q06282	Ref(E) Superfamily	Glycerophosphoryl Diester Phosphodiesterase Precursor (Ec 3.1.4.46).	364	E
Q04441	Ref(E) Superfamily	Cytochrome C Oxidase Polypeptide Ii Precursor (Ec 1.9.3.1).	342	E
P96278	Ref(E) Superfamily	Cu-Zn Superoxide Dismutase of Mtb (SodC gene).	241	E
P94202	Ref(E) Superfamily	Alginate biosynthesis protein algK precursor.	460	E
P58599	Ref(E) Superfamily	Endoglucanase precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase) (Cellulase).	424	E
P57544	Ref(H) Superfamily	Ubiquinol Oxidase Polypeptide II Precursor (Ec 1.10.3.-).	296	E
P52066	Ref(E) Superfamily	Membrane-Bound Lytic Murein Transglycosylase C Precursor (Ec 3.2.1.-).	359	E
P49008	Ref(E) Superfamily	Beta-Hexosaminidase Precursor (Ec 3.2.1.52).	777	E
P44550	Ref(H) Superfamily	Thiamine Biosynthesis Lipoprotein Apbe Precursor.	346	E
P41052	Ref(E) Superfamily	Membrane-Bound Lytic Murein Transglycosylase B Precursor (Ec 3.2.1.-).	361	E
P33256	Ref(H) Superfamily	Atp Synthase B Chain Precursor (Ec 3.6.1.34).	198	E
P29761	Ref(E) Superfamily	Glucoamylase Precursor (Ec 3.2.1.3).	702	E
P23931	Ref(E) Superfamily	Membrane-Bound Lytic Murein Transglycosylase D Precursor (Ec 3.2.1.-).	452	E
P22848	Ref(H) Superfamily	5'-Nucleotidase Precursor (Ec 3.1.3.5).	560	E
P20440	Ref(E) Superfamily	Pullulanase Secretion Protein Puls Precursor.	125	E
P14308	Ref(E) Superfamily	Protease Maturation Protein Precursor.	299	E
P14250	Ref(E) Superfamily	Endoglucanase 3 Precursor (Ec 3.2.1.4) (Endo-1,4-Beta-Glucanase)\|(Cellulase) (Eg3).	658	E
P13980	Ref(E) Superfamily	Trat Complement Resistance Protein Precursor.	245	E
P13670	Ref(E) Superfamily	N,N'-Diacetylchitobiase Precursor (Ec 3.2.1.52) (Chitobiase).	883	E
P07811	Ref(E) Superfamily	Pullulanase Precursor (Ec 3.2.1.41).	1096	E
P06548	Ref(E) Superfamily	Beta-Lactamase III Precursor (Ec 3.5.2.6).	316	E
P02987	Ref(E) Superfamily	Lysis Protein Precursor (Protein H).	49	E
O82947	Ref(E) Superfamily	Photosynthetic Reaction Center Cytochrome C Subunit Precursor.	383	E

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References

Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005