DOLOP - A Database of Bacterial Lipoproteins

Binding Proteins

Features:

Click on the Swiss-Prot ID to get a niceprot entry for the protein from Swiss-Prot

Click on the SUPERFAMILY to get functional domain assignment for the sequence from SUPERFAMILY

Click on the Description to get the PDB entry

Click on the Type identifier to get the BLAST output from http://www.expasy.org/

Representation of the Type Identifier:

A   - Antigens
Ad  - Adhesins
B   - Binding Proteins
E   - Enzymes
T   - Transporters
Tx  - Toxin
S   - Structural Proteins
If  - Interesting Factors - basically non classifiable
H   - Hypothetical lipoproteins

Swiss-Prot ID	MEDLINE reference and Superfa mily domain assignment	Description	Length	Type
Q9S529	Ref(E) Superfamily	Putative metal-binding lipoprotein CT067 precursor.	326	B
Q9PKX2	Ref(E) Superfamily	Putative metal-binding lipoprotein TC0338 precursor.	326	B
Q9KEE7	Ref(E) Superfamily	Probable arabinose-binding protein precursor.	445	B
Q9CBE5	Ref(E) Superfamily	Phosphate-binding protein 3 precursor (PBP-3) (PstS-3).	369	B
Q8Y653	Ref(E) Superfamily	Manganese-binding lipoprotein mntA precursor.	310	B
Q8X8V9	Ref(E) Superfamily	D-methionine-binding lipoprotein metQ precursor.	271	B
Q51933	Ref(E) Superfamily	Oligopeptide-Binding Protein Alib Precursor.	652	B
Q51397	Ref(E) Superfamily	Outer Membrane Protein Oprj Precursor.	479	B
Q46036	Ref(E) Superfamily	Outer Membrane Lipoprotein Blc Precursor.	177	B
Q45462	Ref(E) Superfamily	Choline-Binding Protein Precursor.	306	B
Q09087	Ref(E) Superfamily	Outer Surface Protein A Precursor.	273	B
Q09057	Ref(E) Superfamily	Transferrin-Binding Protein 2 Precursor (Tbp-2).	711	B
Q08255	Ref(E) Superfamily	Glucose/Galactose-Binding Lipoprotein Precursor.	403	B
Q06758	Ref(E) Superfamily	Histidine-Binding Protein Precursor (Hbp).	268	B
Q03709	Ref(E) Superfamily	Lysis Protein For Colicin E7 Precursor	47	B
Q00749	Ref(E) Superfamily	Multiple Sugar-Binding Protein Precursor.	420	B
P95157	Ref(H) Superfamily	Molybdate-Binding Protein Precursor.	261	B
P77685	Ref(E) Superfamily	Lipoprotein Spr Precursor.	188	B
P48242	Ref(E) Superfamily	Glutamate-Binding Protein Precursor.	295	B
P46922	Ref(E) Superfamily	Glycine Betaine-Binding Protein Precursor.	293	B
P42708	Ref(E) Superfamily	Nisin Immunity Protein Precursor.	245	B
P42061	Ref(E) Superfamily	Oligopeptide-Binding Protein Appa Precursor.	543	B
P40409	Ref(E) Superfamily	Iron-Uptake System Binding Protein Precursor.	317	B
P37580	Ref(E) Superfamily	Ferrichrome-Binding Protein Precursor.	315	B
P36949	Ref(E) Superfamily	D-Ribose-Binding Protein Precursor.	305	B
P35592	Ref(E) Superfamily	Oligopeptide-Binding Protein Alia Precursor.	660	B
P33950	Ref(E) Superfamily	Heme-Binding Protein A Precursor (Hemin-Binding Lipoprotein).	547	B
P29850	Ref(E) Superfamily	Maltose/Maltodextrin-Binding Protein Precursor.	423	B
P27676	Ref(E) Superfamily	Glutamine-Binding Protein Precursor (Glnbp).	262	B
P26906	Ref(E) Superfamily	Dipeptide-Binding Protein Dppe Precursor.	543	B
P24141	Ref(E) Superfamily	Oligopeptide-Binding Protein Oppa Precursor.	545	B
P18791	Ref(E) Superfamily	Oligopeptide-Binding Protein Amia Precursor.	659	B
P15176	Ref(E) Superfamily	Lysis Protein For Colicin E9 Precursor	47	B
P13345	Ref(E) Superfamily	Lysis Protein For Colicin E6 Precursor	47	B
P13344	Ref(E) Superfamily	Lysis Protein For Colicin E5 Precursor	47	B
P11460	Ref(E) Superfamily	Ferric Anguibactin-Binding Protein Precursor.	322	B
P10099	Ref(E) Superfamily	Lysis Protein For Colicin E8 Precursor	47	B
P09181	Ref(E) Superfamily	Lysis Protein For Colicin N Precursor.	52	B
P06963	Ref(E) Superfamily	Lysis Protein For Colicins E2 And E3 Precursor	47	B
P06962	Ref(E) Superfamily	Lysis Protein For Colicin A Precursor.	51	B
P05821	Ref(E) Superfamily	Lysis Protein For Colicin E1 Precursor	45	B
O32243	Ref(E) Superfamily	Glycine Betaine/Carnitine/Choline-Binding Protein Precursor.	303	B
O05870	Ref(E) Superfamily	Phosphate-binding protein 2 precursor (PBP-2) (PstS-2).	370	B

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References

Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India
This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005