Do you have a lipoprotein ? - find out by submitting the sequence



This program searches for probable lipoprotein signal sequence using the following criteria

  • Presence of + charged aminoacids in the initial residues
  • Presence of atleast 7-22 residues between the predicted Lipobox and the charged residue
  • Presence of a Lipobox within the first 40 residues from the N-termninus with the consensus as [LVI][ASTVI][ASG][C]

Tripartite nature of the signal peptide



Please enter only one sequence as plain text without any other extra information (spaces and numbers will be automatically excluded. Please do not enter any specal characters)


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References

  • Madan Babu, M. and Sankaran, K. (2002) DOLOP - database of bacterial lipoproteins, Bioinformatics. 18:641-643. PDF
  • Madan Babu, M., Leena Priya, M., Tamil Selvan, A., Madera, M., Gough, J. and Sankaran, K. (2003) An updated version of DOLOP with functional assignments to predicted lipoproteins, Journal of Bacteriology, in press.

 

This website is Maintained by M. Madan Babu * and K. Sankaran #
* MRC-Laboratory of Molecular Biology, Cambridge - CB22QH, U.K
# Centre for Biotechnology, Anna University, Chennai - 600025, India

This site is dedicated to Prof. Henry. C. Wu
Last modified : 14th April 2005