57667_57667_57667_ E_2581 46_30_16 2581 A_23 B_24 E_4849 --A_23 B_24 E_4849 --A_23 B_24 E_4849 -- 47380_54001_endn_63763_82199_54862_50249_51351_54211_56672_48726_57903_57825_47862_50814_57850_54984_57667_57586_57774_57783_53098_52467_81271_53383_49599_50939_56091_56327_99999 52047_49599_57667_57903_50939_48726_55307_57783_51735_endc_57825_47175_82919_82199_54862_99999 INPDB RPT C2H2 and C2HC zinc fingers--C2H2 and C2HC zinc fingers--C2H2 and C2HC zinc fingers-- 48726_48726_48726_ E_1029 24_15_9 1029 A_14 B_78 E_4071 --A_14 B_78 E_4071 --A_14 B_78 E_4071 -- 53067_56436_endn_47769_51905_49265_52047_82671_54211_48726_52058_54975_48350_99999_56112 55116_63501_81296_endc_49265_48726_56487_99999_56112 INPDB RPT Immunoglobulin--Immunoglobulin--Immunoglobulin-- 57196_57196_57196_ E_705 42_27_15 705 A_2 B_7 E_2358 --A_2 B_7 E_2358 --A_2 B_7 E_2358 -- 50969_56436_endn_49899_57362_57095_57184_53597_53300_57630_49265_57535_52047_57196_52799_48726_57581_57567_54511_69179_49854_82895_57302_82153_50939_57501_99999 50242_49899_69687_57184_53300_endc_49265_57196_49785_48726_57467_57501_57581_99999_57567 INPDB RPT EGF/Laminin--EGF/Laminin--EGF/Laminin-- 49313_49313_49313_ B_3 E_546 8_5_3 549 A_3 B_17 E_754 --A_3 B_17 E_754 --A_3 B_17 E_754 -- endn_57184_51735_49313_99999 endc_49313_99999 INPDB RPT Cadherin--Cadherin--Cadherin-- 49265_49265_49265_ A_2 B_6 E_507 22_13_9 515 A_23 B_135 E_1734 --A_23 B_135 E_1734 --A_23 B_135 E_1734 -- 57196_53383_endn_81296_57603_51621_57256_48726_50965_57016_53300_49265_99999 51126_57603_49899_48726_53300_56496_endc_99999_49265 INPDB RPT Fibronectin type III--Fibronectin type III--Fibronectin type III-- 52540_50447_54980_ A_17 B_356 E_115 10_5_5 488 A_2129 B_14320 E_12913 --A_102 B_772 E_432 --A_28 B_403 E_157 -- 54211_endn_51182_55608_99999 52540_54211_54980_endc_99999 INPDB CPL P-loop containing nucleotide triphosphate hydrolases--Translation proteins--EF-G/eEF-2 domains III and V-- 55785_47384_55874_ A_26 B_438 E_16 16_11_5 480 A_168 B_1284 E_394 --A_45 B_1750 E_74 --A_178 B_2970 E_398 -- 46966_endn_56849_46579_55781_53474_52172_48317_99999_53850_55785 53271_52172_endc_53850_99999 NOTPDB CPL PYP-like sensor domain (PAS domain)--Homodimeric domain of signal transducing histidine kinase--ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-- 52440_56059_51246_ A_31 B_344 E_88 14_4_10 463 A_71 B_698 E_210 --A_192 B_1104 E_490 --A_31 B_372 E_107 -- 51230_endn_48670_99999 51230_50729_51332_51735_endc_55154_51261_55326_52255_99999 INPDB CPL PreATP-grasp domain--Glutathione synthetase ATP-binding domain-like--Rudiment single hybrid motif-- 52518_52467_52518_ A_40 B_287 E_57 9_5_4 384 A_239 B_1128 E_328 --A_132 B_640 E_265 --A_239 B_1128 E_328 -- 52047_endn_99999_53850_57802 63393_51735_endc_99999 INPDB CPL Thiamin diphosphate-binding fold (THDP-binding)--DHS-like NAD/FAD-binding domain--Thiamin diphosphate-binding fold (THDP-binding)-- 48592_54849_52029_ A_37 B_129 E_208 5_2_3 374 A_38 B_136 E_258 --A_39 B_132 E_217 --A_38 B_142 E_269 -- endn_99999 endc_52029_99999 INPDB CPL GroEL equatorial domain-like chaperone equatorial domain--GroEL-intermediate domain like--GroEL apical domain-like-- 52540_50447_50465_ A_30 B_186 E_147 11_7_4 363 A_2129 B_14320 E_12913 --A_102 B_772 E_432 --A_47 B_206 E_195 -- 51126_endn_48695_57783_46988_57802_99999 52540_53383_endc_99999 INPDB CPL P-loop containing nucleotide triphosphate hydrolases--Translation proteins--EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain-- 52540_52540_52540_ A_29 B_149 E_173 26_18_8 351 A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 -- endn_82708_54585_47571_81923_54862_50249_53795_54768_47576_52540_57756_57783_48695_47413_53383_56091_99999 52540_47794_54690_endc_52402_53795_75553_99999 NOTPDB RPT P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases-- 53738_53738_53738_ A_32 B_249 E_66 10_6_4 347 A_38 B_288 E_93 --A_38 B_288 E_93 --A_38 B_288 E_93 -- 54637_53738_endn_81799_51161_99999 53738_55957_53271_99999 INPDB RPT Phosphoglucomutase, first 3 domains--Phosphoglucomutase, first 3 domains--Phosphoglucomutase, first 3 domains-- 47384_55874_52172_ A_3 B_334 E_6 18_9_9 343 A_45 B_1750 E_74 --A_178 B_2970 E_398 --A_85 B_3166 E_241 -- endn_50998_81648_47226_55781_52172_99999_55785_53850 63411_47226_52172_48283_47384_endc_55073_99999_55874 NOTPDB CPL Homodimeric domain of signal transducing histidine kinase--ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase--CheY-like-- 53738_53738_55957_ A_32 B_242 E_63 3_1_2 337 A_38 B_288 E_93 --A_38 B_288 E_93 --A_32 B_251 E_80 -- 53738 endc_99999 INPDB RPT Phosphoglucomutase, first 3 domains--Phosphoglucomutase, first 3 domains--Phosphoglucomutase, C-terminal domain-- 53067_53067_56778_ A_9 B_142 E_186 8_4_4 337 A_176 B_1667 E_1029 --A_176 B_1667 E_1029 --A_14 B_148 E_238 -- 53067_endn_52058_99999 51126_53300_endc_99999 NOTPDB RPT Actin-like ATPase domain--Actin-like ATPase domain--Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment-- 48726_49265_49265_ E_333 9_4_5 333 A_14 B_78 E_4071 --A_23 B_135 E_1734 --A_23 B_135 E_1734 -- endn_48726_99999_49265 48726_endc_56112_99999_49265 INPDB RPT Immunoglobulin--Fibronectin type III--Fibronectin type III-- 57716_57716_57716_ E_325 14_9_5 325 A_72 B_426 E_2067 --A_72 B_426 E_2067 --A_72 B_426 E_2067 -- endn_57586_50156_48695_54862_57716_57903_99999_57850 57716_50156_endc_46689_99999 INPDB RPT Glucocorticoid receptor-like (DNA-binding domain)--Glucocorticoid receptor-like (DNA-binding domain)--Glucocorticoid receptor-like (DNA-binding domain)-- 81653_81665_56784_ A_25 B_243 E_46 8_3_5 314 A_48 B_376 E_513 --A_43 B_361 E_378 --A_230 B_1745 E_1267 -- endn_52172_99999 53383_55008_endc_81665_99999 NOTPDB CPL Calcium ATPase, transduction domain A--Calcium ATPase, transmembrane domain M--HAD-like-- 52518_52518_52922_ B_270 E_40 4_2_2 310 A_239 B_1128 E_328 --A_239 B_1128 E_328 --A_105 B_497 E_111 -- endn_99999 endc_99999 INPDB RPT Thiamin diphosphate-binding fold (THDP-binding)--Thiamin diphosphate-binding fold (THDP-binding)--TK C-terminal domain-like-- 50615_52540_47917_ A_20 B_210 E_66 6_3_3 296 A_38 B_324 E_95 --A_2129 B_14320 E_12913 --A_49 B_235 E_120 -- endn_47917_99999 50615_endc_99999 INPDB CPL N-terminal domain of alpha and beta subunits of F1 ATP synthase--P-loop containing nucleotide triphosphate hydrolases--C-terminal domain of alpha and beta subunits of F1 ATP synthase-- 48726_48726_49265_ E_292 9_4_5 292 A_14 B_78 E_4071 --A_14 B_78 E_4071 --A_23 B_135 E_1734 -- endn_48726_99999_49265 48726_endc_56112_49265_99999 NOTPDB RPT Immunoglobulin--Immunoglobulin--Fibronectin type III-- 54928_54928_54928_ E_289 9_6_3 289 A_6 B_60 E_3471 --A_6 B_60 E_3471 --A_6 B_60 E_3471 -- 54928_endn_48208_53316_53098_99999 54928_endc_99999 NOTPDB RPT RNA-binding domain, RBD--RNA-binding domain, RBD--RNA-binding domain, RBD-- 82895_82895_82895_ E_248 17_9_8 248 E_618 --E_618 --E_618 -- endn_50494_48726_57492_57283_49482_49854_82895_99999 57196_48726_57184_57362_endc_57567_99999_82895 NOTPDB RPT TSP-1 type 1 repeat--TSP-1 type 1 repeat--TSP-1 type 1 repeat-- 54980_54211_54980_ A_15 B_144 E_75 5_3_2 234 A_28 B_403 E_157 --A_200 B_1096 E_669 --A_28 B_403 E_157 -- 52540_endn_50447 endc_99999 INPDB CPL EF-G/eEF-2 domains III and V--Ribosomal protein S5 domain 2-like--EF-G/eEF-2 domains III and V-- 57535_57535_57535_ E_233 18_12_6 233 B_3 E_582 --B_3 E_582 --B_3 E_582 -- 57059_56436_endn_57184_53300_49854_50104_57535_57196_57302_48726_99999 57196_53300_endc_50370_99999_57535 INPDB RPT Complement control module/SCR domain--Complement control module/SCR domain--Complement control module/SCR domain-- 54236_47031_50729_ E_224 9_3_6 224 A_18 B_81 E_1815 --B_13 E_440 --A_14 B_44 E_3057 -- endn_54236_99999 50729_50156_48065_endc_57850_99999 INPDB CPL Ubiquitin-like--Second domain of FERM--PH domain-like-- 53795_50331_50331_ A_21 B_192 E_3 3_1_2 216 A_421 B_3843 E_485 --A_61 B_521 E_45 --A_61 B_521 E_45 -- endn endc_99999 INPDB RPT PEP carboxykinase-like--MOP-like--MOP-like-- 46966_46966_46966_ E_210 14_7_7 210 A_7 B_30 E_584 --A_7 B_30 E_584 --A_7 B_30 E_584 -- 52087_endn_46966_50729_47576_47473_99999 51045_46966_75399_50044_47473_endc_99999 INPDB RPT Spectrin repeat--Spectrin repeat--Spectrin repeat-- 51984_53623_53244_ A_3 B_200 E_2 5_2_3 205 A_9 B_210 E_6 --A_21 B_536 E_49 --A_16 B_527 E_43 -- endn_99999 52440_endc_99999 INPDB CPL MurCD N-terminal domain--MurD-like peptide ligases, catalytic domain--MurD-like peptide ligases, peptide-binding domain-- 57424_57424_57424_ E_200 22_13_9 200 E_497 --E_497 --E_497 -- 63501_endn_57424_57667_63825_49854_57283_63829_57196_48726_57501_57567_99999 57196_63501_81321_57424_50494_48726_57184_endc_99999 INPDB RPT LDL receptor-like module--LDL receptor-like module--LDL receptor-like module-- 51215_46689_46689_ B_189 E_5 7_3_4 194 A_1 B_240 E_12 --A_246 B_4125 E_4002 --A_246 B_4125 E_4002 -- endn_49785_99999 53807_56529_endc_99999 NOTPDB RPT Regulatory protein AraC--Homeodomain-like--Homeodomain-like-- 82861_50182_82689_ A_28 B_161 E_3 8_4_4 192 A_40 B_181 E_12 --A_84 B_323 E_404 --A_35 B_209 E_8 -- 47986_endn_48019_99999 51206_53474_endc_99999 INPDB CPL Mechanosensitive channel protein MscS (YggB), transmembrane region--Sm-like ribonucleoproteins--Mechanosensitive channel protein MscS (YggB), C-terminal domain-- 50800_51621_52935_ A_13 B_108 E_57 6_3_3 178 A_21 B_142 E_93 --A_75 B_609 E_182 --A_19 B_116 E_66 -- endn_53187_99999 52009_endc_99999 INPDB CPL PK beta-barrel domain-like--Phosphoenolpyruvate/pyruvate domain--Pyruvate kinase, C-terminal domain-- 51735_48179_52413_ A_21 B_131 E_23 7_4_3 175 A_993 B_8798 E_3827 --A_71 B_674 E_226 --A_23 B_134 E_35 -- endn_53756_51905_99999 51735_endc_99999 INPDB CPL NAD(P)-binding Rossmann-fold domains--6-phosphogluconate dehydrogenase C-terminal domain-like--UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain-- 51230_47005_52777_ A_5 B_137 E_32 5_3_2 174 A_35 B_1330 E_195 --A_6 B_185 E_52 --A_10 B_418 E_328 -- 51230_endn_99999 52777_endc NOTPDB CPL Single hybrid motif--Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex--CoA-dependent acyltransferases-- 50677_52374_47323_ A_29 B_98 E_46 6_2_4 173 A_53 B_299 E_143 --A_247 B_1540 E_642 --A_100 B_688 E_246 -- endn_99999 47323_46589_endc_99999 INPDB CPL ValRS/IleRS/LeuRS editing domain--Nucleotidylyl transferase--Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases-- 81660_56784_81665_ A_10 B_42 E_120 5_3_2 172 A_16 B_89 E_466 --A_230 B_1745 E_1267 --A_43 B_361 E_378 -- endn_81653_99999 endc_99999 INPDB CPL Calcium ATPase, ATP-binding domain N--HAD-like--Calcium ATPase, transmembrane domain M-- 55785_55785_55785_ A_53 B_113 E_6 15_8_7 172 A_168 B_1284 E_394 --A_168 B_1284 E_394 --A_168 B_1284 E_394 -- endn_54631_46579_55781_52172_53850_55785_99999 46894_55781_endc_47384_55073_55785_99999 NOTPDB RPT PYP-like sensor domain (PAS domain)--PYP-like sensor domain (PAS domain)--PYP-like sensor domain (PAS domain)-- 81653_81665_81660_ A_4 B_46 E_117 6_2_4 167 A_48 B_376 E_513 --A_43 B_361 E_378 --A_16 B_89 E_466 -- endn_99999 56784_endc_47240_99999 INPDB CPL Calcium ATPase, transduction domain A--Calcium ATPase, transmembrane domain M--Calcium ATPase, ATP-binding domain N-- 50447_54980_54980_ B_152 E_14 2_1_1 166 A_102 B_772 E_432 --A_28 B_403 E_157 --A_28 B_403 E_157 -- 52540 99999 NOTPDB RPT Translation proteins--EF-G/eEF-2 domains III and V--EF-G/eEF-2 domains III and V-- 50249_50249_50249_ A_10 B_70 E_75 13_5_8 155 A_390 B_2734 E_1438 --A_390 B_2734 E_1438 --A_390 B_2734 E_1438 -- 52540_50249_endn_47661_99999 52540_55681_50249_48452_endc_46785_48439_99999 INPDB RPT Nucleic acid-binding proteins--Nucleic acid-binding proteins--Nucleic acid-binding proteins-- 63418_53623_53244_ B_153 E_1 7_4_3 154 B_167 E_6 --A_21 B_536 E_49 --A_16 B_527 E_43 -- endn_56784_69125_99999 endc_53623_99999 INPDB CPL MurE/MurF N-terminal domain--MurD-like peptide ligases, catalytic domain--MurD-like peptide ligases, peptide-binding domain-- 50044_55550_56112_ E_150 5_3_2 150 A_2 B_84 E_1671 --A_4 B_15 E_910 --A_114 B_971 E_9319 -- endn_50729_99999 endc_99999 INPDB CPL SH3-domain--SH2 domain--Protein kinase-like (PK-like)-- 55973_55973_55973_ B_93 E_55 3_2_1 148 A_2 B_100 E_69 --A_2 B_100 E_69 --A_2 B_100 E_69 -- endn_99999 endc INPDB RPT S-adenosylmethionine synthetase--S-adenosylmethionine synthetase--S-adenosylmethionine synthetase-- 55874_54211_56719_ A_6 B_115 E_24 5_3_2 145 A_178 B_2970 E_398 --A_200 B_1096 E_669 --A_12 B_354 E_44 -- endn_82199_99999 endc_99999 NOTPDB CPL ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase--Ribosomal protein S5 domain 2-like--Type II DNA topoisomerase-- 52833_52833_52833_ E_138 9_4_5 138 A_220 B_2517 E_2068 --A_220 B_2517 E_2068 --A_220 B_2517 E_2068 -- endn_52833_46565_99999 51126_52833_endc_49265_99999 INPDB RPT Thioredoxin-like--Thioredoxin-like--Thioredoxin-like-- 47364_52540_47446_ A_16 B_96 E_20 5_2_3 132 A_35 B_206 E_59 --A_2129 B_14320 E_12913 --A_18 B_101 E_23 -- endn_99999 52540_endc_99999 INPDB CPL Domain of the SRP/SRP receptor G-proteins--P-loop containing nucleotide triphosphate hydrolases--Signal peptide-binding domain-- 55190_52374_47323_ A_12 B_97 E_22 3_2_1 131 A_17 B_103 E_34 --A_247 B_1540 E_642 --A_100 B_688 E_246 -- endn_99999 endc INPDB CPL Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain--Nucleotidylyl transferase--Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases-- 55186_55681_52954_ A_3 B_101 E_25 4_3_1 129 A_42 B_237 E_81 --A_205 B_1250 E_450 --A_75 B_353 E_158 -- endn_81271_99999 endc INPDB CPL Threonyl-tRNA synthetase (ThrRS), second 'additional' domain--Class II aaRS and biotin synthetases--Anticodon-binding domain of Class II aaRS-- 52540_50447_52156_ A_17 B_77 E_35 7_4_3 129 A_2129 B_14320 E_12913 --A_102 B_772 E_432 --A_17 B_103 E_43 -- 81271_endn_55826_99999 50447_endc_99999 INPDB CPL P-loop containing nucleotide triphosphate hydrolases--Translation proteins--Initiation factor IF2/eIF5b, domain 3-- 81296_51445_51011_ A_4 B_107 E_14 5_3_2 125 A_40 B_404 E_1207 --A_89 B_1646 E_1474 --A_17 B_377 E_212 -- endn_81296_99999 endc_99999 INPDB CPL E set domains--(Trans)glycosidases--alpha-Amylases, C-terminal beta-sheet domain-- 52440_56059_48108_ A_12 B_87 E_21 6_3_3 120 A_71 B_698 E_210 --A_192 B_1104 E_490 --A_16 B_93 E_27 -- endn_52317_99999 52440_endc_99999 INPDB CPL PreATP-grasp domain--Glutathione synthetase ATP-binding domain-like--Carbamoyl phosphate synthetase, large subunit connection domain-- 51735_48179_48179_ A_15 B_77 E_28 6_4_2 120 A_993 B_8798 E_3827 --A_71 B_674 E_226 --A_71 B_674 E_226 -- 53335_52096_endn_99999 52096_endc NOTPDB RPT NAD(P)-binding Rossmann-fold domains--6-phosphogluconate dehydrogenase C-terminal domain-like--6-phosphogluconate dehydrogenase C-terminal domain-like-- 48108_52440_56059_ A_13 B_86 E_21 6_2_4 120 A_16 B_93 E_27 --A_71 B_698 E_210 --A_192 B_1104 E_490 -- endn_56059 endc_52335_51735_99999 INPDB CPL Carbamoyl phosphate synthetase, large subunit connection domain--PreATP-grasp domain--Glutathione synthetase ATP-binding domain-like-- 81923_52540_52540_ B_111 E_8 5_2_3 119 A_1 B_223 E_50 --A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 -- endn_99999 52540_endc_99999 INPDB RPT Double Clp-N motif--P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases-- 55785_55785_47384_ A_10 B_106 E_3 10_7_3 119 A_168 B_1284 E_394 --A_168 B_1284 E_394 --A_45 B_1750 E_74 -- endn_46579_55781_52172_47473_99999_55785 endc_99999_55874 NOTPDB RPT PYP-like sensor domain (PAS domain)--PYP-like sensor domain (PAS domain)--Homodimeric domain of signal transducing histidine kinase-- 56059_48108_52440_ A_12 B_85 E_21 4_2_2 118 A_192 B_1104 E_490 --A_16 B_93 E_27 --A_71 B_698 E_210 -- endn_52440 56059_endc INPDB CPL Glutathione synthetase ATP-binding domain-like--Carbamoyl phosphate synthetase, large subunit connection domain--PreATP-grasp domain-- 56037_46955_55681_ A_17 B_83 E_18 6_3_3 118 A_22 B_111 E_25 --A_55 B_784 E_148 --A_205 B_1250 E_450 -- 50249_endn_46955 endc_99999_54991 INPDB CPL B3/B4 domain of PheRS, PheT--Putative DNA-binding domain--Class II aaRS and biotin synthetases-- 49503_49503_49503_ B_41 E_77 8_3_5 118 A_81 B_368 E_450 --A_81 B_368 E_450 --A_81 B_368 E_450 -- endn_49503_99999 49503_endc_50974_53671_99999 INPDB RPT Cupredoxins--Cupredoxins--Cupredoxins-- 57196_57184_57196_ E_117 18_9_9 117 A_2 B_7 E_2358 --B_4 E_859 --A_2 B_7 E_2358 -- 47686_endn_57184_57095_82895_57196_48726_57581_99999 82153_57196_48726_49899_57184_endc_57581_57535_99999 NOTPDB CPL EGF/Laminin--Growth factor receptor domain--EGF/Laminin-- 52540_81767_52540_ B_112 E_4 6_3_3 116 A_2129 B_14320 E_12913 --B_114 E_8 --A_2129 B_14320 E_12913 -- endn_50978_99999 81886_endc_99999 INPDB CPL P-loop containing nucleotide triphosphate hydrolases--Pre-protein croslinking domain of SecA--P-loop containing nucleotide triphosphate hydrolases-- 81767_52540_81886_ B_111 E_2 3_1_2 113 B_114 E_8 --A_2129 B_14320 E_12913 --B_111 E_6 -- 52540 endc_99999 INPDB CPL Pre-protein croslinking domain of SecA--P-loop containing nucleotide triphosphate hydrolases--Helical scaffold and wing domains of SecA-- 53901_53901_52151_ B_94 E_19 14_8_6 113 A_95 B_891 E_374 --A_95 B_891 E_374 --B_266 E_103 -- 53901_50129_endn_53474_52777_47336_52151_99999 54637_53901_endc_47336_55048_99999 NOTPDB RPT Thiolase-like--Thiolase-like--FabD/lysophospholipase-like-- 50249_55681_55261_ B_98 E_11 4_3_1 109 A_390 B_2734 E_1438 --A_205 B_1250 E_450 --A_18 B_103 E_20 -- 50249_endn_99999 99999 INPDB CPL Nucleic acid-binding proteins--Class II aaRS and biotin synthetases--Prokaryotic AspRS, insert domain-- 54631_54631_54631_ A_55 B_6 E_47 7_4_3 108 A_209 B_782 E_239 --A_209 B_782 E_239 --A_209 B_782 E_239 -- endn_54631_54862_99999 54631_endc_99999 NOTPDB RPT CBS-domain--CBS-domain--CBS-domain-- 57938_49493_49493_ A_3 B_29 E_75 6_4_2 107 A_19 B_61 E_147 --A_8 B_140 E_172 --A_8 B_140 E_172 -- 46565_53098_81730_99999 endc_99999 NOTPDB RPT Cysteine-rich domain of the chaperone protein DnaJ.--HSP40/DnaJ peptide-binding domain--HSP40/DnaJ peptide-binding domain-- 53150_48334_52540_ A_4 B_74 E_29 6_3_3 107 A_4 B_81 E_57 --A_8 B_135 E_96 --A_2129 B_14320 E_12913 -- endn_55271_99999 52540_endc_99999 INPDB CPL DNA repair protein MutS, domain II--DNA repair protein MutS, domain III--P-loop containing nucleotide triphosphate hydrolases-- 47831_52009_51621_ B_107 7_5_2 107 B_111 E_6 --A_27 B_221 E_13 --A_75 B_609 E_182 -- 53223_endn_55594_55781_99999 55804_endc NOTPDB CPL Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain--Phosphohistidine domain--Phosphoenolpyruvate/pyruvate domain-- 81665_81660_56784_ B_25 E_81 5_3_2 106 A_43 B_361 E_378 --A_16 B_89 E_466 --A_230 B_1745 E_1267 -- endn_81653_99999 endc_99999 NOTPDB CPL Calcium ATPase, transmembrane domain M--Calcium ATPase, ATP-binding domain N--HAD-like-- 46915_54211_55666_ A_2 B_89 E_15 7_2_5 106 A_2 B_92 E_20 --A_200 B_1096 E_669 --A_29 B_159 E_70 -- endn_55666 50249_54791_endc_99999_54814 INPDB CPL Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3--Ribosomal protein S5 domain 2-like--Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5-- 52440_56059_52335_ A_9 B_81 E_15 5_2_3 105 A_71 B_698 E_210 --A_192 B_1104 E_490 --A_15 B_241 E_47 -- endn_48108 51556_endc_53671 INPDB CPL PreATP-grasp domain--Glutathione synthetase ATP-binding domain-like--Methylglyoxal synthase-like-- 74788_75632_46785_ E_104 4_2_2 104 B_2 E_132 --A_1 B_1 E_144 --A_1241 B_7979 E_2143 -- endn_99999 52047_endc INPDB CPL Culin repeat--Culin homology domain--"Winged helix" DNA-binding domain-- 55979_55979_55979_ B_102 E_2 3_2_1 104 A_31 B_141 E_99 --A_31 B_141 E_99 --A_31 B_141 E_99 -- endn_99999 endc INPDB RPT DNA clamp--DNA clamp--DNA clamp-- 48452_48452_48452_ A_1 B_16 E_87 11_6_5 104 A_146 B_1937 E_3442 --A_146 B_1937 E_3442 --A_146 B_1937 E_3442 -- 53383_endn_48452_55008_48439_99999 48452_57501_endc_48439_99999 NOTPDB RPT TPR-like--TPR-like--TPR-like-- 81271_55186_55681_ A_1 B_78 E_24 4_2_2 103 A_25 B_298 E_67 --A_42 B_237 E_81 --A_205 B_1250 E_450 -- endn_99999 52954_endc INPDB CPL TGS-like--Threonyl-tRNA synthetase (ThrRS), second 'additional' domain--Class II aaRS and biotin synthetases-- 55666_46915_54211_ B_89 E_14 5_1_4 103 A_29 B_159 E_70 --A_2 B_92 E_20 --A_200 B_1096 E_669 -- 54211 54791_55666_endc_99999 INPDB CPL Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5--Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3--Ribosomal protein S5 domain 2-like-- 54211_55666_46915_ B_89 E_14 4_3_1 103 A_200 B_1096 E_669 --A_29 B_159 E_70 --A_2 B_92 E_20 -- 54791_endn_99999 54211 INPDB CPL Ribosomal protein S5 domain 2-like--Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5--Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3-- 46548_51971_51971_ A_10 B_88 E_5 10_6_4 103 A_125 B_477 E_67 --A_47 B_404 E_155 --A_47 B_404 E_155 -- endn_54292_52343_99999_69336_54862 46548_51395_endc_99999 NOTPDB RPT alpha-helical ferredoxin--Nucleotide-binding domain--Nucleotide-binding domain-- 56091_50249_47781_ B_101 E_1 6_2_4 102 A_34 B_180 E_92 --A_390 B_2734 E_1438 --A_49 B_595 E_68 -- endn_99999 52113_endc_47781_99999 INPDB CPL DNA ligase/mRNA capping enzyme, catalytic domain--Nucleic acid-binding proteins--RuvA domain 2-like-- 50447_52156_50447_ A_17 B_52 E_33 3_1_2 102 A_102 B_772 E_432 --A_17 B_103 E_43 --A_102 B_772 E_432 -- 52540 endc_99999 INPDB CPL Translation proteins--Initiation factor IF2/eIF5b, domain 3--Translation proteins-- 56553_55257_47789_ B_99 E_1 2_1_1 100 A_17 B_105 E_51 --A_36 B_108 E_92 --B_120 E_11 -- 99999 endc NOTPDB CPL Insert subdomain of RNA polymerase alpha subunit--RBP11-like subunits of RNA polymerase--C-terminal domain of RNA polymerase alpha subunit-- 69705_50249_54814_ B_97 3_1_2 97 A_1 B_101 --A_390 B_2734 E_1438 --A_82 B_390 E_98 -- endn 54791_54814 INPDB CPL Transcription factor NusA, N-terminal domain--Nucleic acid-binding proteins--Prokaryotic type KH domain (pKH-domain)-- 52540_52540_46600_ A_5 B_92 5_3_2 97 A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 --A_10 B_212 E_6 -- 53335_endn_99999 endc_99999 NOTPDB RPT P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases--C-terminal UvrC-binding domain of UvrB-- 52317_46689_46689_ B_96 E_1 4_2_2 97 A_204 B_1244 E_262 --A_246 B_4125 E_4002 --A_246 B_4125 E_4002 -- endn_99999 endc_99999 NOTPDB RPT Class I glutamine amidotransferase-like--Homeodomain-like--Homeodomain-like-- 46565_57938_49493_ A_4 B_25 E_68 5_2_3 97 A_12 B_326 E_827 --A_19 B_61 E_147 --A_8 B_140 E_172 -- endn_99999 49493_endc_99999 NOTPDB CPL Chaperone J-domain--Cysteine-rich domain of the chaperone protein DnaJ.--HSP40/DnaJ peptide-binding domain-- 81624_46946_57716_ B_93 E_3 4_2_2 96 B_105 E_21 --A_48 B_219 E_75 --A_72 B_426 E_2067 -- endn_99999 endc_99999 INPDB CPL N-terminal domain of MutM-like DNA repair proteins--S13-like H2TH domain--Glucocorticoid receptor-like (DNA-binding domain)-- 50249_54814_54814_ B_96 5_1_4 96 A_390 B_2734 E_1438 --A_82 B_390 E_98 --A_82 B_390 E_98 -- 69705 47794_endc_47789_99999 INPDB RPT Nucleic acid-binding proteins--Prokaryotic type KH domain (pKH-domain)--Prokaryotic type KH domain (pKH-domain)-- 69318_69179_69179_ E_95 7_4_3 95 A_6 B_79 E_181 --A_2 B_11 E_172 --A_2 B_11 E_172 -- endn_69179_53300_99999 69179_endc_99999 INPDB RPT Integrin alpha N-terminal domain--Integrin domains--Integrin domains-- 54631_54631_51412_ A_10 B_60 E_25 3_1_2 95 A_209 B_782 E_239 --A_209 B_782 E_239 --A_45 B_354 E_83 -- 99999 endc_99999 INPDB RPT CBS-domain--CBS-domain--Inosine monophosphate dehydrogenase (IMPDH)-- 49785_49303_51445_ A_1 B_77 E_17 13_6_7 95 A_10 B_366 E_724 --A_2 B_88 E_38 --A_89 B_1646 E_1474 -- endn_49785_49899_56988_75005_99999 49785_49899_56988_49303_endc_74650_99999 INPDB CPL Galactose-binding domain-like--beta-Galactosidase/glucuronidase domain--(Trans)glycosidases-- 50249_56037_46955_ B_92 6_4_2 92 A_390 B_2734 E_1438 --A_22 B_111 E_25 --A_55 B_784 E_148 -- 55681_endn_55008_99999 55681_99999 INPDB CPL Nucleic acid-binding proteins--B3/B4 domain of PheRS, PheT--Putative DNA-binding domain-- 52317_52402_54810_ A_1 B_83 E_7 3_2_1 91 A_204 B_1244 E_262 --A_350 B_1402 E_436 --A_13 B_87 E_19 -- endn_99999 endc INPDB CPL Class I glutamine amidotransferase-like--Adenine nucleotide alpha hydrolases-like--GMP synthetase C-terminal dimerisation domain-- 50156_50156_50156_ A_1 B_1 E_89 9_4_5 91 A_28 B_534 E_1380 --A_28 B_534 E_1380 --A_28 B_534 E_1380 -- 51045_endn_50156_99999 51182_50044_50156_endc_99999 NOTPDB RPT PDZ domain-like--PDZ domain-like--PDZ domain-like-- 57716_57716_46689_ E_90 7_5_2 90 A_72 B_426 E_2067 --A_72 B_426 E_2067 --A_246 B_4125 E_4002 -- endn_57716_48695_57850_99999 endc_99999 NOTPDB RPT Glucocorticoid receptor-like (DNA-binding domain)--Glucocorticoid receptor-like (DNA-binding domain)--Homeodomain-like-- 50249_47781_46929_ B_90 2_1_1 90 A_390 B_2734 E_1438 --A_49 B_595 E_68 --A_4 B_93 E_19 -- endn endc INPDB CPL Nucleic acid-binding proteins--RuvA domain 2-like--DNA helicase RuvA subunit, C-terminal domain-- 47576_47576_46966_ E_90 6_3_3 90 B_8 E_704 --B_8 E_704 --A_7 B_30 E_584 -- endn_50729_99999 46966_endc_99999 NOTPDB RPT Calponin-homology domain, CH-domain--Calponin-homology domain, CH-domain--Spectrin repeat-- 57625_57625_57625_ E_88 8_4_4 88 B_2 E_246 --B_2 E_246 --B_2 E_246 -- 57625_57440_endn_99999 57625_endc_51445_99999 NOTPDB RPT Tachycitin--Tachycitin--Tachycitin-- 57196_57196_57184_ E_88 10_6_4 88 A_2 B_7 E_2358 --A_2 B_7 E_2358 --B_4 E_859 -- 57196_endn_49899_54511_57184_99999 57196_57184_endc_99999 NOTPDB RPT EGF/Laminin--EGF/Laminin--Growth factor receptor domain-- 63882_53218_63867_ A_13 B_54 E_20 8_4_4 87 A_38 B_93 E_30 --A_63 B_253 E_54 --A_13 B_59 E_22 -- 52540_endn_53218_99999 endc_53218_99999_53850 NOTPDB CPL Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains--Molybdenum cofactor biosynthesis proteins--Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain-- 51735_52210_52210_ A_31 B_55 E_1 6_3_3 87 A_993 B_8798 E_3827 --A_60 B_218 E_78 --A_60 B_218 E_78 -- endn_56059_55729 56059_endc_99999 NOTPDB RPT NAD(P)-binding Rossmann-fold domains--Succinyl-CoA synthetase domains--Succinyl-CoA synthetase domains-- 53901_52151_55048_ B_72 E_14 3_2_1 86 A_95 B_891 E_374 --B_266 E_103 --B_179 E_32 -- endn_53901 99999 NOTPDB CPL Thiolase-like--FabD/lysophospholipase-like--Probable ACP-binding domain of malonyl-CoA ACP transacylase-- 55781_47384_55874_ A_2 B_78 E_5 10_6_4 85 A_54 B_1030 E_131 --A_45 B_1750 E_74 --A_178 B_2970 E_398 -- endn_55781_52172_55785_99999_53955 52540_52172_endc_99999 NOTPDB CPL GAF domain-like--Homodimeric domain of signal transducing histidine kinase--ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-- 52777_56801_47336_ B_80 E_4 7_3_4 84 A_10 B_418 E_328 --A_139 B_882 E_563 --A_4 B_486 E_88 -- endn_52777_99999 52777_53474_endc_99999 NOTPDB CPL CoA-dependent acyltransferases--Firefly luciferase-like--ACP-like-- 52172_52540_46689_ B_83 4_3_1 83 A_85 B_3166 E_241 --A_2129 B_14320 E_12913 --A_246 B_4125 E_4002 -- endn_46689_99999 endc NOTPDB CPL CheY-like--P-loop containing nucleotide triphosphate hydrolases--Homeodomain-like-- 50249_47781_52113_ B_83 3_1_2 83 A_390 B_2734 E_1438 --A_49 B_595 E_68 --A_1 B_117 E_366 -- 56091 52113_endc INPDB CPL Nucleic acid-binding proteins--RuvA domain 2-like--BRCT domain-- 50156_50044_52540_ E_83 4_3_1 83 A_28 B_534 E_1380 --A_2 B_84 E_1671 --A_2129 B_14320 E_12913 -- endn_50156_99999 endc NOTPDB CPL PDZ domain-like--SH3-domain--P-loop containing nucleotide triphosphate hydrolases-- 50494_50156_50156_ B_79 E_3 8_6_2 82 A_19 B_482 E_1600 --A_28 B_534 E_1380 --A_28 B_534 E_1380 -- endn_52518_52440_55961_47240_99999 endc_99999 INPDB RPT Trypsin-like serine proteases--PDZ domain-like--PDZ domain-like-- 46955_55681_54991_ B_81 E_1 4_3_1 82 A_55 B_784 E_148 --A_205 B_1250 E_450 --A_1 B_97 E_27 -- endn_56037_99999 endc INPDB CPL Putative DNA-binding domain--Class II aaRS and biotin synthetases--Anticodon-binding domain of PheRS-- 56487_56487_56487_ E_81 9_5_4 81 B_1 E_193 --B_1 E_193 --B_1 E_193 -- 57440_endn_56487_49854_99999 50494_56487_endc_99999 NOTPDB RPT Scavenger receptor cysteine-rich (SRCR) domain--Scavenger receptor cysteine-rich (SRCR) domain--Scavenger receptor cysteine-rich (SRCR) domain-- 51735_55347_69055_ B_78 E_3 3_2_1 81 A_993 B_8798 E_3827 --A_119 B_836 E_588 --B_78 E_4 -- endn_99999 endc INPDB CPL NAD(P)-binding Rossmann-fold domains--Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain--1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain-- 53041_47807_53098_ B_79 E_1 4_2_2 80 A_60 B_294 E_160 --A_34 B_131 E_87 --A_290 B_2494 E_2335 -- endn_99999 56672_endc INPDB CPL Resolvase-like--5' to 3' exonuclease, C-terminal subdomain--Ribonuclease H-like-- 54791_54791_54791_ E_79 11_6_5 79 A_38 B_130 E_562 --A_38 B_130 E_562 --A_38 B_130 E_562 -- 54928_54791_endn_48508_54814_99999 54791_endc_51679_54814_99999 NOTPDB RPT Eukaryotic type KH-domain (eKH-domain)--Eukaryotic type KH-domain (eKH-domain)--Eukaryotic type KH-domain (eKH-domain)-- 47807_53098_56672_ B_79 2_1_1 79 A_34 B_131 E_87 --A_290 B_2494 E_2335 --A_66 B_378 E_3164 -- 53041 endc INPDB CPL 5' to 3' exonuclease, C-terminal subdomain--Ribonuclease H-like--DNA/RNA polymerases-- 56059_52009_51621_ A_19 B_55 E_4 3_2_1 78 A_192 B_1104 E_490 --A_27 B_221 E_13 --A_75 B_609 E_182 -- endn_99999 endc INPDB CPL Glutathione synthetase ATP-binding domain-like--Phosphohistidine domain--Phosphoenolpyruvate/pyruvate domain-- 52096_51735_48179_ B_55 E_23 5_2_3 78 A_96 B_1208 E_331 --A_993 B_8798 E_3827 --A_71 B_674 E_226 -- endn_99999 endc_48179_99999 NOTPDB CPL ClpP/crotonase--NAD(P)-binding Rossmann-fold domains--6-phosphogluconate dehydrogenase C-terminal domain-like-- 55271_53150_48334_ A_2 B_72 E_3 4_2_2 77 A_4 B_79 E_36 --A_4 B_81 E_57 --A_8 B_135 E_96 -- endn_99999 52540_endc INPDB CPL DNA repair protein MutS, domain I--DNA repair protein MutS, domain II--DNA repair protein MutS, domain III-- 57424_57424_57196_ E_76 6_3_3 76 E_497 --E_497 --A_2 B_7 E_2358 -- endn_57424_99999 57196_63825_endc INPDB RPT LDL receptor-like module--LDL receptor-like module--EGF/Laminin-- 49265_48726_49265_ E_75 8_4_4 75 A_23 B_135 E_1734 --A_14 B_78 E_4071 --A_23 B_135 E_1734 -- endn_48726_99999_49265 48726_endc_99999_49265 NOTPDB CPL Fibronectin type III--Immunoglobulin--Fibronectin type III-- 54585_52540_52540_ A_31 E_43 6_3_3 74 A_42 B_8 E_91 --A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 -- 52540_99999_50692 52540_endc_99999 NOTPDB RPT Cdc48 domain 2-like--P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases-- 54292_54862_53706_ A_5 B_54 E_15 4_2_2 74 A_44 B_565 E_187 --A_411 B_743 E_103 --A_63 B_328 E_38 -- endn_99999 endc_50692 NOTPDB CPL 2Fe-2S ferredoxin-like--4Fe-4S ferredoxins--Formate dehydrogenase/DMSO reductase, domains 1-3-- 46966_46966_47473_ E_74 6_3_3 74 A_7 B_30 E_584 --A_7 B_30 E_584 --A_51 B_190 E_2808 -- endn_46966_99999 47473_endc_99999 NOTPDB RPT Spectrin repeat--Spectrin repeat--EF-hand-- 46689_46689_46689_ B_1 E_73 6_3_3 74 A_246 B_4125 E_4002 --A_246 B_4125 E_4002 --A_246 B_4125 E_4002 -- endn_46689_99999 endc_46689_99999 INPDB RPT Homeodomain-like--Homeodomain-like--Homeodomain-like-- 81296_81296_81296_ B_6 E_67 11_8_3 73 A_40 B_404 E_1207 --A_40 B_404 E_1207 --A_40 B_404 E_1207 -- endn_81296_57701_49265_47576_50974_99999_56935 81296_endc_99999 NOTPDB RPT E set domains--E set domains--E set domains-- 57184_57196_57196_ E_73 17_11_6 73 B_4 E_859 --A_2 B_7 E_2358 --A_2 B_7 E_2358 -- 47686_endn_57095_57184_53300_49854_63829_57196_82153_69322_99999 57196_56436_63825_57184_endc_99999 NOTPDB RPT Growth factor receptor domain--EGF/Laminin--EGF/Laminin-- 56645_47203_47203_ E_73 6_4_2 73 A_70 B_599 E_245 --A_62 B_573 E_243 --A_62 B_573 E_243 -- 47203_endn_51735_99999 endc_99999 INPDB RPT Acyl-CoA dehydrogenase NM domain-like--Acyl-CoA dehydrogenase C-terminal domain-like--Acyl-CoA dehydrogenase C-terminal domain-like-- 50692_54585_52540_ A_31 E_42 5_2_3 73 A_113 B_397 E_88 --A_42 B_8 E_91 --A_2129 B_14320 E_12913 -- endn_99999 52540_endc_99999 INPDB CPL ADC-like--Cdc48 domain 2-like--P-loop containing nucleotide triphosphate hydrolases-- 57424_57196_57196_ E_72 9_2_7 72 E_497 --A_2 B_7 E_2358 --A_2 B_7 E_2358 -- endn_57424 69322_50969_63825_endc_69304_63829_99999 INPDB RPT LDL receptor-like module--EGF/Laminin--EGF/Laminin-- 69742_51735_69075_ A_13 B_55 E_3 4_2_2 71 A_13 B_64 E_6 --A_993 B_8798 E_3827 --A_15 B_57 E_7 -- endn_99999 endc_99999 INPDB CPL Glutamyl tRNA-reductase catalytic, N-terminal domain--NAD(P)-binding Rossmann-fold domains--Glutamyl tRNA-reductase dimerization domain-- 57889_57889_57889_ E_71 10_6_4 71 A_7 B_6 E_663 --A_7 B_6 E_663 --A_7 B_6 E_663 -- endn_81296_57903_57889_57850_99999 57903_endc_57889_99999 NOTPDB RPT Cysteine-rich domain--Cysteine-rich domain--Cysteine-rich domain-- 55753_55753_55753_ E_70 7_3_4 70 A_1 B_17 E_251 --A_1 B_17 E_251 --A_1 B_17 E_251 -- endn_55753_99999 47050_endc_99999_55753 INPDB RPT Actin depolymerizing proteins--Actin depolymerizing proteins--Actin depolymerizing proteins-- 52172_52540_48283_ B_70 2_1_1 70 A_85 B_3166 E_241 --A_2129 B_14320 E_12913 --B_220 E_14 -- endn endc NOTPDB CPL CheY-like--P-loop containing nucleotide triphosphate hydrolases--FIS-like-- 50729_47473_51695_ E_70 8_4_4 70 A_14 B_44 E_3057 --A_51 B_190 E_2808 --A_5 B_143 E_312 -- endn_50729_48371_99999 endc_49562_55550_99999 NOTPDB CPL PH domain-like--EF-hand--Phosphatidylinositol-specific phospholipase C (PI-PLC)-- 50630_56672_53098_ E_69 9_6_3 69 A_15 B_69 E_1046 --A_66 B_378 E_3164 --A_290 B_2494 E_2335 -- endn_57756_47027_57774_51283_99999 46919_endc_99999 NOTPDB CPL Acid proteases--DNA/RNA polymerases--Ribonuclease H-like-- 47384_55874_50341_ A_8 B_61 8_4_4 69 A_45 B_1750 E_74 --A_178 B_2970 E_398 --A_19 B_255 E_17 -- 47226_endn_55052_99999 50341_52172_endc_99999 INPDB CPL Homodimeric domain of signal transducing histidine kinase--ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase--CheW-like-- 47576_46966_46966_ E_68 4_3_1 68 B_8 E_704 --A_7 B_30 E_584 --A_7 B_30 E_584 -- endn_47576_99999 46966 NOTPDB RPT Calponin-homology domain, CH-domain--Spectrin repeat--Spectrin repeat-- 69179_69179_69179_ E_67 4_2_2 67 A_2 B_11 E_172 --A_2 B_11 E_172 --A_2 B_11 E_172 -- endn_69318 endc_99999 INPDB RPT Integrin domains--Integrin domains--Integrin domains-- 56014_55124_56014_ A_4 B_57 E_6 3_1_2 67 A_25 B_194 E_20 --A_24 B_104 E_14 --A_25 B_194 E_20 -- 55124 47598_endc INPDB CPL Sulfite reductase hemoprotein (SiRHP), domains 2 and 4--Sulfite reductase, domains 1 and 3--Sulfite reductase hemoprotein (SiRHP), domains 2 and 4-- 49265_49265_48726_ E_67 7_4_3 67 A_23 B_135 E_1734 --A_23 B_135 E_1734 --A_14 B_78 E_4071 -- endn_48726_99999_49265 endc_99999_49265 NOTPDB RPT Fibronectin type III--Fibronectin type III--Immunoglobulin-- 49265_48726_48726_ E_67 9_4_5 67 A_23 B_135 E_1734 --A_14 B_78 E_4071 --A_14 B_78 E_4071 -- endn_48726_99999_49265 48726_endc_56112_99999_49265 NOTPDB RPT Fibronectin type III--Immunoglobulin--Immunoglobulin-- 47336_52777_52777_ B_61 E_6 10_5_5 67 A_4 B_486 E_88 --A_10 B_418 E_328 --A_10 B_418 E_328 -- 53335_endn_56801_51735_99999 56801_52777_47336_endc_99999 NOTPDB RPT ACP-like--CoA-dependent acyltransferases--CoA-dependent acyltransferases-- 57196_57196_49899_ E_65 9_4_5 65 A_2 B_7 E_2358 --A_2 B_7 E_2358 --A_22 B_208 E_1314 -- 57196_endn_49899_99999 57196_49899_endc_57535_99999 NOTPDB RPT EGF/Laminin--EGF/Laminin--Concanavalin A-like lectins/glucanases-- 55785_52540_46689_ B_65 8_7_1 65 A_168 B_1284 E_394 --A_2129 B_14320 E_12913 --A_246 B_4125 E_4002 -- 55021_endn_54631_55594_55781_99999_55785 endc NOTPDB CPL PYP-like sensor domain (PAS domain)--P-loop containing nucleotide triphosphate hydrolases--Homeodomain-like-- 50249_52540_52540_ B_53 E_12 6_2_4 65 A_390 B_2734 E_1438 --A_2129 B_14320 E_12913 --A_2129 B_14320 E_12913 -- endn_99999 52540_endc_53955_99999 NOTPDB RPT Nucleic acid-binding proteins--P-loop containing nucleotide triphosphate hydrolases--P-loop containing nucleotide triphosphate hydrolases-- 47473_51695_49562_ E_65 7_4_3 65 A_51 B_190 E_2808 --A_5 B_143 E_312 --B_12 E_1627 -- endn_50729_47473_99999 endc_51695_99999 INPDB CPL EF-hand--Phosphatidylinositol-specific phospholipase C (PI-PLC)--C2 domain (Calcium/lipid-binding domain, CaLB)-- 57783_47954_47954_ A_26 E_38 4_2_2 64 A_193 B_620 E_393 --A_52 B_42 E_726 --A_52 B_42 E_726 -- endn_99999 endc_99999 NOTPDB RPT Zinc beta-ribbon--Cyclin-like--Cyclin-like-- 54292_47741_56176_ B_10 E_53 6_2_4 63 A_44 B_565 E_187 --A_8 B_97 E_63 --A_43 B_454 E_248 -- endn_56003 55447_54665_endc_99999 INPDB CPL 2Fe-2S ferredoxin-like--CO dehydrogenase ISP C-domain like--FAD-binding domain-- 55326_56042_55326_ A_16 B_43 E_2 6_4_2 61 A_92 B_231 E_44 --A_93 B_263 E_63 --A_92 B_231 E_44 -- 51246_endn_47060_99999 56042_99999 NOTPDB CPL Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain--Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain--Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain-- 50044_50044_50044_ B_7 E_54 9_4_5 61 A_2 B_84 E_1671 --A_2 B_84 E_1671 --A_2 B_84 E_1671 -- endn_49464_50044_99999 50044_48065_endc_55550_99999 NOTPDB RPT SH3-domain--SH3-domain--SH3-domain-- 52374_47323_50249_ A_11 B_49 5_3_2 60 A_247 B_1540 E_642 --A_100 B_688 E_246 --A_390 B_2734 E_1438 -- 57770_endn_99999 endc_99999 NOTPDB CPL Nucleotidylyl transferase--Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases--Nucleic acid-binding proteins-- 46565_48695_49493_ A_2 B_56 E_2 4_2_2 60 A_12 B_326 E_827 --A_18 B_378 E_163 --A_8 B_140 E_172 -- endn_99999 endc_99999 NOTPDB CPL Chaperone J-domain--Multiheme cytochromes--HSP40/DnaJ peptide-binding domain-- 56042_55326_56042_ A_16 B_40 E_2 3_1_2 58 A_93 B_263 E_63 --A_92 B_231 E_44 --A_93 B_263 E_63 -- 55326 53328_endc NOTPDB CPL Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain--Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain--Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain-- 51045_51045_56204_ E_58 3_2_1 58 B_5 E_413 --B_5 E_413 --A_2 E_276 -- 51045_99999 endc NOTPDB RPT WW domain--WW domain--Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap)-- 47648_52418_54680_ A_8 B_47 E_3 4_3_1 58 A_24 B_152 E_15 --A_27 B_155 E_18 --A_13 B_58 E_12 -- endn_50692_99999 endc INPDB CPL Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain--Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain--Pyrimidine nucleoside phosphorylase C-terminal domain-- 46689_46689_55136_ B_56 E_1 3_2_1 57 A_246 B_4125 E_4002 --A_246 B_4125 E_4002 --A_14 B_151 E_12 -- endn_99999 endc INPDB RPT Homeodomain-like--Homeodomain-like--Probable bacterial effector-binding domain-- 55874_52172_47226_ A_1 B_55 5_2_3 56 A_178 B_2970 E_398 --A_85 B_3166 E_241 --A_9 B_246 E_33 -- 47384_99999 47226_endc_99999 NOTPDB CPL ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase--CheY-like--Histidine-containing phosphotransfer domain, HPT domain-- 54292_63380_52343_ B_55 E_1 6_2_4 56 A_44 B_565 E_187 --A_34 B_499 E_327 --A_34 B_384 E_315 -- endn_99999 55920_51905_endc_99999 INPDB CPL 2Fe-2S ferredoxin-like--Riboflavin synthase domain-like--Ferredoxin reductase-like, C-terminal NADP-linked domain-- 57196_57196_63825_ E_55 6_2_4 55 A_2 B_7 E_2358 --A_2 B_7 E_2358 --A_7 B_35 E_205 -- 57424_57184 57196_63825_endc_99999 INPDB RPT EGF/Laminin--EGF/Laminin--Low density lipoprotein (LDL) receptor YWTD domain-- 52058_57184_52058_ E_54 8_3_5 54 A_6 B_143 E_2568 --B_4 E_859 --A_6 B_143 E_2568 -- endn_49265_99999 57184_endc_56112_49265_99999 INPDB CPL L domain-like--Growth factor receptor domain--L domain-like-- 57196_63825_57196_ E_53 13_6_7 53 A_2 B_7 E_2358 --A_7 B_35 E_205 --A_2 B_7 E_2358 -- 57196_57424_75011_63825_99999_57567 57196_50969_57424_75011_63825_endc_99999 INPDB CPL EGF/Laminin--Low density lipoprotein (LDL) receptor YWTD domain--EGF/Laminin-- 51735_55347_55021_ A_2 B_51 2_1_1 53 A_993 B_8798 E_3827 --A_119 B_836 E_588 --A_109 B_662 E_147 -- endn endc NOTPDB CPL NAD(P)-binding Rossmann-fold domains--Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain--Regulatory domain in the aminoacid metabolism-- 57196_49899_57196_ E_52 8_4_4 52 A_2 B_7 E_2358 --A_22 B_208 E_1314 --A_2 B_7 E_2358 -- 57196_49899_57184_99999 57196_49899_endc_99999 NOTPDB CPL EGF/Laminin--Concanavalin A-like lectins/glucanases--EGF/Laminin-- 55681_52954_64586_ A_16 B_17 E_18 5_4_1 51 A_205 B_1250 E_450 --A_75 B_353 E_158 --A_16 B_17 E_21 -- endn_47060_55826_99999 endc INPDB CPL Class II aaRS and biotin synthetases--Anticodon-binding domain of Class II aaRS--C-terminal domain of ProRS-- 47741_56176_55447_ B_10 E_41 4_1_3 51 A_8 B_97 E_63 --A_43 B_454 E_248 --A_9 B_61 E_46 -- 54292 54665_endc_99999 INPDB CPL CO dehydrogenase ISP C-domain like--FAD-binding domain--CO dehydrogenase flavoprotein C-terminal domain-like-- 54211_55666_50249_ B_45 E_5 4_2_2 50 A_200 B_1096 E_669 --A_29 B_159 E_70 --A_390 B_2734 E_1438 -- endn_46915 endc_99999 NOTPDB CPL Ribosomal protein S5 domain 2-like--Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5--Nucleic acid-binding proteins-- 47644_52242_56507_ B_37 E_13 3_1_2 50 A_19 B_54 E_14 --A_62 B_169 E_35 --B_58 E_13 -- 51717 endc_99999 INPDB CPL Methionine synthase domain--Cobalamin (vitamin B12)-binding domain--Methionine synthase activation domain-like-- 47090_55486_50923_ E_49 5_3_2 49 A_5 B_242 E_88 --A_64 B_735 E_1617 --A_1 B_15 E_170 -- 56436_endn_99999 endc_99999 NOTPDB CPL PGBD-like--Metalloproteases ("zincins"), catalytic domain--Hemopexin-like domain-- 57586_49265_49265_ E_48 6_4_2 48 A_15 B_23 E_359 --A_23 B_135 E_1734 --A_23 B_135 E_1734 -- endn_57586_57184_99999 56112_99999 NOTPDB RPT TNF receptor-like--Fibronectin type III--Fibronectin type III-- 55785_55785_55781_ A_11 B_37 15_7_8 48 A_168 B_1284 E_394 --A_168 B_1284 E_394 --A_54 B_1030 E_131 -- endn_55781_81606_52172_64501_99999_55785 endc_47384_55073_75625_55781_81606_99999_55785 NOTPDB RPT PYP-like sensor domain (PAS domain)--PYP-like sensor domain (PAS domain)--GAF domain-like-- 57756_50630_56672_ E_47 6_2_4 47 A_11 B_19 E_1238 --A_15 B_69 E_1046 --A_66 B_378 E_3164 -- endn_99999 56672_endc_99999_53098 NOTPDB CPL Retrovirus zinc finger-like domains--Acid proteases--DNA/RNA polymerases-- 54001_49309_49309_ E_47 3_2_1 47 A_60 B_262 E_1838 --A_22 B_24 E_79 --A_22 B_24 E_79 -- endn_81296 endc INPDB RPT Cysteine proteinases--Transglutaminase, two C-terminal domains--Transglutaminase, two C-terminal domains-- 52210_52210_56059_ A_8 B_39 3_1_2 47 A_60 B_218 E_78 --A_60 B_218 E_78 --A_192 B_1104 E_490 -- 51735 endc_55729 NOTPDB RPT Succinyl-CoA synthetase domains--Succinyl-CoA synthetase domains--Glutathione synthetase ATP-binding domain-like-- 48726_49265_48726_ E_47 10_6_4 47 A_14 B_78 E_4071 --A_23 B_135 E_1734 --A_14 B_78 E_4071 -- 57196_endn_48726_57184_99999_49265 48726_endc_99999_49265 NOTPDB CPL Immunoglobulin--Fibronectin type III--Immunoglobulin-- 68912_50249_52540_ B_45 E_1 5_3_2 46 B_106 E_13 --A_390 B_2734 E_1438 --A_2129 B_14320 E_12913 -- endn_52833_99999 54160_endc NOTPDB CPL Rho termination factor, N-terminal domain--Nucleic acid-binding proteins--P-loop containing nucleotide triphosphate hydrolases-- 49562_49562_49562_ E_46 6_3_3 46 B_12 E_1627 --B_12 E_1627 --B_12 E_1627 -- endn_49562_99999 endc_49562_99999 NOTPDB RPT C2 domain (Calcium/lipid-binding domain, CaLB)--C2 domain (Calcium/lipid-binding domain, CaLB)--C2 domain (Calcium/lipid-binding domain, CaLB)-- 81296_54001_49309_ E_45 3_2_1 45 A_40 B_404 E_1207 --A_60 B_262 E_1838 --A_22 B_24 E_79 -- endn_99999 49309 INPDB CPL E set domains--Cysteine proteinases--Transglutaminase, two C-terminal domains-- 49299_49299_49299_ A_32 B_2 E_11 20_14_6 45 A_103 B_31 E_55 --A_103 B_31 E_55 --A_103 B_31 E_55 -- endn_49299_50969_51126_47473_50998_50960_49373_82171_48726_49464_69318_50974_99999 50960_49299_endc_69318_50998_99999 NOTPDB RPT PKD domain--PKD domain--PKD domain-- 46934_54713_54713_ B_44 E_1 2_1_1 45 A_21 B_114 E_420 --B_103 E_32 --B_103 E_32 -- endn endc INPDB RPT UBA-like--Elongation factor Ts (EF-Ts), dimerisation domain--Elongation factor Ts (EF-Ts), dimerisation domain-- 56801_47336_52777_ B_40 E_4 5_3_2 44 A_139 B_882 E_563 --A_4 B_486 E_88 --A_10 B_418 E_328 -- endn_52777_99999 52777_endc NOTPDB CPL Firefly luciferase-like--ACP-like--CoA-dependent acyltransferases-- 55481_53137_55315_ A_18 E_26 3_1_2 44 A_20 E_26 --A_72 B_204 E_155 --A_69 B_239 E_475 -- endn endc_99999 INPDB CPL N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1--Translational machinery components--L30e-like-- 54001_49758_47473_ E_44 4_2_2 44 A_60 B_262 E_1838 --B_4 E_128 --A_51 B_190 E_2808 -- endn_99999 endc_99999 INPDB CPL Cysteine proteinases--Calpain large subunit, middle domain (domain III)--EF-hand-- 49562_49562_53300_ E_44 4_2_2 44 B_12 E_1627 --B_12 E_1627 --A_51 B_345 E_996 -- endn_99999 endc_99999 NOTPDB RPT C2 domain (Calcium/lipid-binding domain, CaLB)--C2 domain (Calcium/lipid-binding domain, CaLB)--vWA-like-- 46785_55681_50037_ A_4 B_40 3_2_1 44 A_1241 B_7979 E_2143 --A_205 B_1250 E_450 --A_36 B_160 E_9 -- endn_99999 endc INPDB CPL "Winged helix" DNA-binding domain--Class II aaRS and biotin synthetases--C-terminal domain of transcriptional repressors-- 49854_57196_49854_ E_43 8_3_5 43 B_1 E_636 --A_2 B_7 E_2358 --B_1 E_636 -- endn_49854_99999 57196_endc_49854_99999_57535 NOTPDB CPL Spermadhesin, CUB domain--EGF/Laminin--Spermadhesin, CUB domain-- 56176_55447_54665_ E_42 5_3_2 42 A_43 B_454 E_248 --A_9 B_61 E_46 --A_21 B_98 E_68 -- endn_47741_99999 56003_endc INPDB CPL FAD-binding domain--CO dehydrogenase flavoprotein C-terminal domain-like--CO dehydrogenase molybdoprotein N-domain-like-- 52218_63380_52343_ B_35 E_7 4_3_1 42 A_110 B_706 E_157 --A_34 B_499 E_327 --A_34 B_384 E_315 -- 52218_endn_99999 endc NOTPDB CPL Flavoproteins--Riboflavin synthase domain-like--Ferredoxin reductase-like, C-terminal NADP-linked domain-- 52058_52058_52058_ E_42 10_5_5 42 A_6 B_143 E_2568 --A_6 B_143 E_2568 --A_6 B_143 E_2568 -- 52047_endn_52058_53098_99999 52047_52058_endc_56112_99999 NOTPDB RPT L domain-like--L domain-like--L domain-like-- 49599_49599_49599_ E_42 7_4_3 42 A_1 E_685 --A_1 E_685 --A_1 E_685 -- endn_49599_99999_57850 49599_endc_99999 NOTPDB RPT TRAF domain-like--TRAF domain-like--TRAF domain-like-- 82714_82693_82866_ B_40 E_1 4_2_2 41 B_354 E_19 --A_3 B_362 E_31 --A_45 B_639 E_196 -- 82693_99999 endc_99999 NOTPDB CPL Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains--Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains--Multidrug efflux transporter AcrB transmembrane domain-- 81995_82919_53300_ E_41 5_3_2 41 A_1 B_2 E_111 --A_2 B_5 E_56 --A_51 B_345 E_996 -- 52540_endn_99999 endc_99999 INPDB CPL beta-sandwich domain of Sec23/24--Zn-finger domain of Sec23/24--vWA-like-- 63737_55486_48371_ A_1 B_8 E_32 5_3_2 41 A_11 B_85 E_209 --A_64 B_735 E_1617 --A_73 B_255 E_3951 -- 53335_endn_99999 endc_99999 INPDB CPL Leukotriene A4 hydrolase N-terminal domain--Metalloproteases ("zincins"), catalytic domain--ARM repeat-- 57884_46689_46689_ B_40 E_1 6_1_5 41 B_51 E_4 --A_246 B_4125 E_4002 --A_246 B_4125 E_4002 -- endn 46894_55945_endc_99999_53155 NOTPDB RPT Ada DNA repair protein, N-terminal domain (N-Ada 10)--Homeodomain-like--Homeodomain-like-- 57783_57783_57783_ A_1 B_39 E_1 6_3_3 41 A_193 B_620 E_393 --A_193 B_620 E_393 --A_193 B_620 E_393 -- endn_56712_99999 endc_52255_99999 NOTPDB RPT Zinc beta-ribbon--Zinc beta-ribbon--Zinc beta-ribbon-- 55447_54665_56003_ E_41 4_1_3 41 A_9 B_61 E_46 --A_21 B_98 E_68 --A_22 B_115 E_81 -- 56176 54292_endc_99999 INPDB CPL CO dehydrogenase flavoprotein C-terminal domain-like--CO dehydrogenase molybdoprotein N-domain-like--Molybdemum cofactor-binding domain-- 54814_54814_47794_ B_41 5_1_4 41 A_82 B_390 E_98 --A_82 B_390 E_98 --A_29 B_51 E_56 -- 50249 63393_47794_endc_99999 NOTPDB RPT Prokaryotic type KH domain (pKH-domain)--Prokaryotic type KH domain (pKH-domain)--DNA repair protein Rad51, N-terminal domain-- 53300_69318_69179_ E_41 7_3_4 41 A_51 B_345 E_996 --A_6 B_79 E_181 --A_2 B_11 E_172 -- endn_69179_99999 69179_endc_53300_99999 NOTPDB CPL vWA-like--Integrin alpha N-terminal domain--Integrin domains-- 52025_53187_47672_ E_41 4_2_2 41 A_6 B_44 E_200 --A_105 B_1042 E_648 --B_1 E_54 -- endn_99999 endc_99999 INPDB CPL Transferrin receptor ectodomain, apical domain--Zn-dependent exopeptidases--Transferrin receptor ectodomain, C-terminal domain-- 50129_51735_51735_ A_2 B_32 E_7 10_5_5 41 A_67 B_883 E_442 --A_993 B_8798 E_3827 --A_993 B_8798 E_3827 -- 53335_endn_51735_53218_99999 53474_endc_51735_47336_99999 NOTPDB RPT GroES-like--NAD(P)-binding Rossmann-fold domains--NAD(P)-binding Rossmann-fold domains-- 49899_57196_57196_ E_41 10_5_5 41 A_22 B_208 E_1314 --A_2 B_7 E_2358 --A_2 B_7 E_2358 -- 57196_endn_48726_49899_99999 57196_49899_57184_57501_99999 NOTPDB RPT Concanavalin A-like lectins/glucanases--EGF/Laminin--EGF/Laminin-- 48726_56436_56436_ E_41 7_4_3 41 A_14 B_78 E_4071 --A_2 B_62 E_1409 --A_2 B_62 E_1409 -- endn_49785_57184_99999 57196_endc_99999 NOTPDB RPT Immunoglobulin--C-type lectin-like--C-type lectin-like--