KEY Abbr Prots Matched %Prots %aa No.dom No.SFs Doms/SF DupLev AvLen AvDomLen (see below) AquifexAeolicus 1 aa 1522 902 59 49 1203 334 3.6 72 317 261 BorreliaBurgdorferi 1 bb 850 415 49 42 574 225 2.6 61 333 285 BacillusHalodurans 1 bh 4066 2000 49 43 2688 415 6.5 85 292 255 Buchnera 1 bn 564 380 67 56 560 248 2.3 56 328 275 Bacillus subtilis 1 bs 4100 2027 49 44 2754 417 6.6 85 297 263 Campylobacter jejuni 1 cj 1634 845 52 43 1095 329 3.3 70 311 257 Chlamydia muridarum 1 cm 909 423 47 39 604 234 2.6 61 355 301 Chlamydophila pneumoniae J138 1 cp 1070 446 42 36 628 243 2.6 61 343 298 Synechocystis sp. 1 cs 3169 1589 50 42 2164 379 5.7 82 326 274 Chlamydia trachomatis 1 ct 894 419 47 40 597 235 2.5 61 349 298 Deinococcus radiodurans 1 dr 3102 1561 50 42 2007 379 5.3 81 308 255 Escherichia coli 1 ec 4289 2292 53 45 3097 453 6.8 85 317 264 Haemophilus influenzae 1 hi 1709 943 55 48 1243 341 3.6 73 305 266 Helicobacter pylori 1 hp 1553 670 43 38 882 295 3.0 67 317 277 Lactococcus lactis 1 ll 2266 1170 52 43 1514 334 4.5 78 294 245 Mycobacterium tuberculosis 1 mb 3918 1959 50 41 2650 392 6.8 85 339 281 Mycoplasma genitalium 1 mg 480 261 54 41 362 172 2.1 52 364 276 Mycobacterium leprae 1 ml 1605 844 53 40 910 273 3.3 70 336 256 Mycoplasma pneumoniae 1 mp 677 308 45 35 414 179 2.3 57 351 267 Neisseria meningitidis 1 nm 2025 941 46 43 1264 342 3.7 73 290 267 Pseudomonas aeruginosa 1 pa 5570 3079 55 45 4261 439 9.7 90 334 274 Pasteurella multocida 1 pm 2014 1112 55 46 1467 359 4.1 76 332 275 Rickettsia prowazekii 1 rp 834 437 52 44 605 248 2.4 59 335 283 Thermotoga maritima 1 tm 1846 1003 54 46 1335 343 3.9 74 315 268 Treponema pallidum 1 tp 1031 467 45 38 655 235 2.8 64 340 282 Ureaplasma urealyticum 1 uu 611 267 44 33 367 170 2.2 54 373 278 Vibrio cholerae 1 vc 3835 1852 48 42 2527 424 6.0 83 304 261 Xylella fastidiosa 1 xf 2766 1097 40 41 1477 359 4.1 76 268 278 Abbr = organism abbreviation Prots = no. predicted proteins in genome Matched = no. proteins with structural assignment %Prots = percentage proteins with structural assignment %aa = percentage residues with structural assignment No. dom = no. structural domains assigned No. SFS = no. superfamilies assigned Doms/SF = average no. domains per superfamily DupLev = duplication level; (no. domains - no. superfamilies)/no. domains AvLen = average length of a predicted protein in residues AvDomLen= average length of an assigned domain in residues