Domain Combinations in Archaeal, Eubacterial and Eukaryotic Proteomes

Gordana Apic1, Julian Gough1 and Sarah A. Teichmann2

1MR C Laboratory of Molecular Biol,ogy, Hills Road, Cambridge CB2 2QH,UK.
2Depatment of Biochemistry & Molecular Biology, Univerity College London, Darwin BldgGower Street, London WC1E 6BT, UK.






DATA
 

        Example how to run the script:
        extract_genes_from_clu.pl  xx.clu  xx.leng  >  xx.domainmap

        Example of domainmap format for E.coli genome : ec.domainmap
 

DOMAIN COMBINATIONS IN GENOMES COMPARED TO PDB

Domain combinations present in genomes but not in PDB with gene names, descriptions and domainmap
information.

Domain combinations present in PDB only.
 

INVERTED DOMAIN PAIRS

PDB structures containing inverted domain pairs

Two-domain proteins from the genomes that have inverted domain pairs